JuliaPy / JuliaPy/PythonCall.jl
On PythonCall load, UndefRefError: access to undefined reference
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Description
**Affects:** PythonCall
**Describe the bug**
https://github.com/JuliaIO/PyTensorStore.jl/actions/runs/24747323082/job/72507767012?pr=3
```
ERROR: LoadError: InitError: UndefRefError: access to undefined reference
Stacktrace:
[1] _pyjl_new(t::Ptr{PythonCall.C.PyObject}, ::Ptr{PythonCall.C.PyObject}, ::Ptr{PythonCall.C.PyObject})
@ PythonCall.JlWrap.Cjl ~/.julia/packages/PythonCall/83z4q/src/JlWrap/C.jl:24
[2] PyObject_CallObject
@ ~/.julia/packages/PythonCall/83z4q/src/C/pointers.jl:300 [inlined]
[3] PyJuliaValue_New
@ ~/.julia/packages/PythonCall/83z4q/src/JlWrap/C.jl:392 [inlined]
[4] macro expansion
@ ~/.julia/packages/PythonCall/83z4q/src/Core/Py.jl:118 [inlined]
[5] pyjl(t::PythonCall.Py, v::Module)
@ PythonCall.JlWrap ~/.julia/packages/PythonCall/83z4q/src/JlWrap/base.jl:7
[6] pyjl
@ ~/.julia/packages/PythonCall/83z4q/src/JlWrap/any.jl:400 [inlined]
[7] Py
@ ~/.julia/packages/PythonCall/83z4q/src/JlWrap/base.jl:141 [inlined]
[8] macro expansion
@ ~/.julia/packages/PythonCall/83z4q/src/Core/Py.jl:117 [inlined]
[9] pysetattr
@ ~/.julia/packages/PythonCall/83z4q/src/Core/builtins.jl:78 [inlined]
[10] setproperty!(x::PythonCall.Py, k::Symbol, v::Module)
@ PythonCall.Core ~/.julia/packages/PythonCall/83z4q/src/Core/Py.jl:281
[11] __init__()
@ PythonCall.JlWrap ~/.julia/packages/PythonCall/83z4q/src/JlWrap/JlWrap.jl:70
[12] run_module_init(mod::Module, i::Int64)
@ Base ./loading.jl:1445
[13] register_restored_modules(sv::Core.SimpleVector, pkg::Base.PkgId, path::String)
@ Base ./loading.jl:1433
[14] _include_from_serialized(pkg::Base.PkgId, path::String, ocachepath::String, depmods::Vector{Any}; register::Bool)
@ Base ./loading.jl:1321
[15] _include_from_serialized
@ ./loading.jl:1276 [inlined]
[16] _require_search_from_serialized(pkg::Base.PkgId, sourcepath::String, build_id::UInt128, stalecheck::Bool; reasons::Dict{String, Int64}, DEPOT_PATH::Vector{String})
@ Base ./loading.jl:2117
[17] _require_search_from_serialized
@ ./loading.jl:2011 [inlined]
[18] __require_prelocked(pkg::Base.PkgId, env::String)
@ Base ./loading.jl:2629
[19] _require_prelocked(uuidkey::Base.PkgId, env::String)
@ Base ./loading.jl:2495
[20] macro expansion
@ ./loading.jl:2423 [inlined]
[21] macro expansion
@ ./lock.jl:376 [inlined]
[22] __require(into::Module, mod::Symbol)
@ Base ./loading.jl:2388
[23] require(into::Module, mod::Symbol)
@ Base ./loading.jl:2364
[24] top-level scope
@ ~/work/PyTensorStore.jl/PyTensorStore.jl/src/PyTensorStore.jl:3
[25] include(mod::Module, _path::String)
@ Base ./Base.jl:306
[26] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
@ Base ./loading.jl:3028
[27] top-level scope
@ stdin:5
[28] eval(m::Module, e::Any)
@ Core ./boot.jl:489
[29] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
@ Base ./loading.jl:2874
[30] include_string
@ ./loading.jl:2884 [inlined]
[31] exec_options(opts::Base.JLOptions)
@ Base ./client.jl:315
[32] _start()
@ Base ./client.jl:550
during initialization of module JlWrap
in expression starting at /home/runner/work/PyTensorStore.jl/PyTensorStore.jl/src/PyTensorStore.jl:1
```
**Your system**
Please provide detailed information about your system:
Ubuntu Linux (Github Linux runner)
Julia 1.12.6
Python 3.14.4
PythonCall v0.9.31
**Additional context**
Add any other context about the problem here.
Contributor guide
No contributing guide indexed for this repository
Research direction
Start by rerunning the linked GitHub Actions job on Ubuntu with Julia 1.12.6, Python 3.14.4, and PythonCall v0.9.31. Read PyTensorStore.jl/src/PyTensorStore.jl alongside the stack-trace locations in PythonCall's JlWrap/C.jl, C/pointers.jl, and JlWrap/JlWrap.jl. Done means the package loads without the reported UndefRefError in that environment.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- julia, python
- Domain
- backend
- Issue type
- Bug
- Difficulty
- 4/5
- Estimated time
- 3-5 days
- Activity status
- Quiet
- Clarity
- Mostly clear
- Newbie friendliness
- 45/100