JuliaPy / JuliaPy/PythonCall.jl
Bug with `cugraph` and `MAT.jl`
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Descrição
**Affects:** PythonCall
**Describe the bug**
I tried to do
```julia
using MAT, PythonCall
py_cugraph = pyimport("cugraph");
```
and it errored (see the end of the bug report for the first few lines of the error).
If, instead I try
```julia
using PythonCall
py_cugraph = pyimport("cugraph");
using MAT
```
it works fine (no errors), and I can run commands from `cugraph`. But this cannot work when preparing a package because all `using` commands supersede the `pyimport` commands defined in the `__init()__` routine. g
I am copying below the state of the `Project.toml` and `CondaPkg.toml` that reproduces this error on `Linux`.
**System**
Information about the system:
- The operating system: `Linux linux53 5.15.0-75-generic #82-Ubuntu SMP Tue Jun 6 23:10:23 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux`
- `Julia v1.9.0`
- `PythonCall v0.9.13`
- `MAT v0.10.5`
- `Pkg.status()`
```
Status `/tmp/problem/Project.toml`
[992eb4ea] CondaPkg v0.2.18
[23992714] MAT v0.10.5
[6099a3de] PythonCall v0.9.13
```
- `CondaPkg.status()`
```
CondaPkg Status /tmp/problem/CondaPkg.toml
Environment
/tmp/problem/.CondaPkg/env
Packages
cudf v23.06.01 (23.06.1)
cugraph v23.06.02 (23.06.2)
scipy v1.11.1 (1.11.1)
Channels
conda-forge
nvidia
rapidsai
```
**Additional context**
I am sharing here the first few lines of the error:
```
s2n_init() failed: 402653193 (NULL pointer encountered)
Fatal error condition occurred in /home/conda/feedstock_root/build_artifacts/aws-c-io_1686376437702/work/source/s2n/s2n_tls_channel_handler.c:203: 0 && "s2n_init() failed"
Exiting Application
################################################################################
Stack trace:
################################################################################
/tmp/problem/.CondaPkg/env/lib/python3.10/site-packages/pyarrow/../../../././libaws-c-common.so.1(aws_backtrace_print+0x59) [0x7f03a8af0839]
/tmp/problem/.CondaPkg/env/lib/python3.10/site-packages/pyarrow/../../../././libaws-c-common.so.1(aws_fatal_assert+0x46) [0x7f03a8ade646]
/tmp/problem/.CondaPkg/env/lib/python3.10/site-packages/pyarrow/../../../././libaws-c-io.so.1.0.0(+0x29641) [0x7f03a8995641]
/tmp/problem/.CondaPkg/env/lib/python3.10/site-packages/pyarrow/../../../././libaws-c-mqtt.so.1.0.0(aws_mqtt_library_init+0x21) [0x7f03a8a902c1]
/tmp/problem/.CondaPkg/env/lib/python3.10/site-packages/pyarrow/../../.././libaws-crt-cpp.so(_ZN3Aws3Crt9ApiHandleC2EP13aws_allocator+0x2d) [0x7f03a9103dad]
/tmp/problem/.CondaPkg/env/lib/python3.10/site-packages/pyarrow/../../.././libaws-cpp-sdk-core.so(_ZN3Aws13InitializeCrtEv+0x30) [0x7f03a92ceaf0]
/tmp/problem/.CondaPkg/env/lib/python3.10/site-packages/pyarrow/../../.././libaws-cpp-sdk-core.so(_ZN3Aws7InitAPIERKNS_10SDKOptionsE+0x4a) [0x7f03a92cd46a]
/tmp/problem/.CondaPkg/env/lib/python3.10/site-packages/pyarrow/../../../libarrow.so.1100(+0x108e233) [0x7f03ab0bf233]
/tmp/problem/.CondaPkg/env/lib/python3.10/site-packages/pyarrow/../../../libarrow.so.1100(_ZN5arrow2fs12InitializeS3ERKNS0_15S3GlobalOptionsE+0x47) [0x7f03ab0c4127]
/tmp/problem/.CondaPkg/env/lib/python3.10/site-packages/pyarrow/_s3fs.cpython-310-x86_64-linux-gnu.so(+0x139e1) [0x7f03a41a69e1]
```
Guia de contribuição
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Direção de pesquisa
Reproduce the two import orders using the Project.toml and CondaPkg.toml states shown in the report, focusing on PythonCall's __init__ routine and pyimport calls. Compare the failing and working initialization paths and the displayed libaws/libarrow stack trace. Done means the documented package-preparation scenario works without the cugraph initialization error.
Escrita pelo modelo de indexação a partir do texto da issue.
Avaliação
- Stack de tecnologia
- python
- Domínio
- backend
- Tipo de issue
- Bug
- Dificuldade
- 4/5
- Tempo estimado
- 3-5 dias
- Status de atividade
- Estagnada
- Clareza
- Razoavelmente clara
- Facilidade para iniciantes
- 35/100