JuliaPy / JuliaPy/PyCall.jl

Error on building 'PyCall' argument not expected: --satisfied-skip-solve

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Descrizione

Julia can't build and precompile some packages as PyCall.jl The problem is produced in the build process when force the argument when set the root environment with `conda install -y --satisfied-skip-solve numpy` when the version of conda/mamba do not accept this argument.

It could solve by make false the "satisfied_skip_solve" or simply take off the argument (if do not want to use other verification)

`
use_conda = dirname(python) == abspath(Conda.PYTHONDIR)
if use_conda
Conda.add("numpy"; `**satisfied_skip_solve=true** )`
end
`

On Mac OSX Sonoma 14.2 apple chip M2
Julia 1.9.3, Python 3.12 and Mamba(Conda)

`julia> Pkg.build("PyCall"); Pkg.precompile()
Building Conda ─→ `/opt/mamba/envs/mcd/share/julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/8c86e48c0db1564a1d49548d3515ced5d604c408/build.log`
Building PyCall → `/opt/mamba/envs/mcd/share/julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/43d304ac6f0354755f1d60730ece8c499980f7ba/build.log`
ERROR: Error building `PyCall`:
The following argument was not expected: --satisfied-skip-solve
Run with --help for more information.
[ Info: Running `conda install -y --satisfied-skip-solve numpy` in root environment
ERROR: LoadError: failed process: Process(setenv(`/opt/homebrew/opt/micromamba/bin/micromamba install -y --satisfied-skip-solve numpy`,["FC_FOR_BUILD=/opt/mamba/envs/mcd/bin/x86_64-apple-darwin13.4.0-gfortran", "LSCOLORS=Gxfxcxdxbxegedabagacad", "PATH=/opt/mamba/envs/mcd/bin:/opt/mamba/condabin:/opt/homebrew/bin:/opt/homebrew/sbin:/usr/local/bin:/System/Cryptexes/App/usr/bin:/usr/bin:/bin:/usr/sbin:/sbin:/var/run/com.apple.security.cryptexd/codex.system/bootstrap/usr/local/bin:/var/run/com.apple.security.cryptexd/codex.system/bootstrap/usr/bin:/var/run/com.apple.security.cryptexd/codex.system/bootstrap/usr/appleinternal/bin:/Applications/quarto/bin:/opt/homebrew/var/homebrew/linked", "CXX=x86_64-apple-darwin13.4.0-clang++", "DENO_DOM_VERSION=0.1.35-alpha", "F95=/opt/mamba/envs/mcd/bin/x86_64-apple-darwin13.4.0-gfortran", "CC=x86_64-apple-darwin13.4.0-clang", "CXXFLAGS=-march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O2 -pipe -stdlib=libc++ -fvisibility-inlines-hidden -fmessage-length=0 -isystem /opt/mamba/envs/mcd/include", "OTOOL=x86_64-apple-darwin13.4.0-otool", "DEBUG_CFLAGS=-march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O2 -pipe -Og -g -Wall -Wextra -isystem /opt/mamba/envs/mcd/include" … "TERM_SESSION_ID=E9F5F9AB-DC24-46BA-85CF-5C439346566B", "ac_cv_func_realloc_0_nonnull=yes", "BUILD=x86_64-apple-darwin13.4.0", "QUARTO_DENO=/opt/mamba/envs/mcd/bin/deno", "JULIA_LOAD_PATH=@:/var/folders/75/ftt9_lrn0292knych8n_rsgw0000gn/T/jl_KuLfDj", "DEBUG_CXXFLAGS=-march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O2 -pipe -stdlib=libc++ -fvisibility-inlines-hidden -fmessage-length=0 -Og -g -Wall -Wextra -isystem /opt/mamba/envs/mcd/include", "ac_cv_func_malloc_0_nonnull=yes", "MAMBA_ROOT_PREFIX=/opt/mamba", "LS_COLORS=di=1;36:ln=35:so=32:pi=33:ex=31:bd=34;46:cd=34;43:su=30;41:sg=30;46:tw=30;42:ow=30;43", "OPENBLAS_MAIN_FREE=1"]), ProcessExited(109)) [109]

Stacktrace:
[1] pipeline_error
@ ./process.jl:565 [inlined]
[2] run(::Cmd; wait::Bool)
@ Base ./process.jl:480
[3] run
@ ./process.jl:477 [inlined]
[4] runconda(args::Cmd, env::String)
@ Conda /opt/mamba/envs/mcd/share/julia/packages/Conda/2lg2O/src/Conda.jl:128
[5] add(pkg::String, env::String; channel::String, satisfied_skip_solve::Bool, args::Cmd)
@ Conda /opt/mamba/envs/mcd/share/julia/packages/Conda/2lg2O/src/Conda.jl:256
[6] add
@ /opt/mamba/envs/mcd/share/julia/packages/Conda/2lg2O/src/Conda.jl:239 [inlined]
[7] top-level scope
@ /opt/mamba/envs/mcd/share/julia/packages/PyCall/ilqDX/deps/build.jl:79
[8] include(fname::String)
@ Base.MainInclude ./client.jl:478
[9] top-level scope
@ none:5
in expression starting at /opt/mamba/envs/mcd/share/julia/packages/PyCall/ilqDX/deps/build.jl:43
Stacktrace:
[1] pkgerror(msg::String)
@ Pkg.Types /opt/mamba/envs/mcd/share/julia/stdlib/v1.9/Pkg/src/Types.jl:69
[2] (::Pkg.Operations.var"#67#74"{Bool, Pkg.Types.Context, String, Pkg.Types.PackageSpec, String})()
@ Pkg.Operations /opt/mamba/envs/mcd/share/julia/stdlib/v1.9/Pkg/src/Operations.jl:1153
[3] withenv(::Pkg.Operations.var"#67#74"{Bool, Pkg.Types.Context, String, Pkg.Types.PackageSpec, String}, ::Pair{String, String}, ::Vararg{Pair{String}})
@ Base ./env.jl:197
[4] (::Pkg.Operations.var"#117#122"{String, Bool, Bool, Bool, Pkg.Operations.var"#67#74"{Bool, Pkg.Types.Context, String, Pkg.Types.PackageSpec, String}, Pkg.Types.PackageSpec})()
@ Pkg.Operations /opt/mamba/envs/mcd/share/julia/stdlib/v1.9/Pkg/src/Operations.jl:1827
[5] with_temp_env(fn::Pkg.Operations.var"#117#122"{String, Bool, Bool, Bool, Pkg.Operations.var"#67#74"{Bool, Pkg.Types.Context, String, Pkg.Types.PackageSpec, String}, Pkg.Types.PackageSpec}, temp_env::String)
@ Pkg.Operations /opt/mamba/envs/mcd/share/julia/stdlib/v1.9/Pkg/src/Operations.jl:1701
[6] (::Pkg.Operations.var"#115#120"{Dict{String, Any}, Bool, Bool, Bool, Pkg.Operations.var"#67#74"{Bool, Pkg.Types.Context, String, Pkg.Types.PackageSpec, String}, Pkg.Types.Context, Pkg.Types.PackageSpec, String, Pkg.Types.Project, String})(tmp::String)
@ Pkg.Operations /opt/mamba/envs/mcd/share/julia/stdlib/v1.9/Pkg/src/Operations.jl:1790
[7] mktempdir(fn::Pkg.Operations.var"#115#120"{Dict{String, Any}, Bool, Bool, Bool, Pkg.Operations.var"#67#74"{Bool, Pkg.Types.Context, String, Pkg.Types.PackageSpec, String}, Pkg.Types.Context, Pkg.Types.PackageSpec, String, Pkg.Types.Project, String}, parent::String; prefix::String)
@ Base.Filesystem ./file.jl:760
[8] mktempdir(fn::Function, parent::String)
@ Base.Filesystem ./file.jl:756
[9] mktempdir
@ ./file.jl:756 [inlined]
[10] sandbox(fn::Function, ctx::Pkg.Types.Context, target::Pkg.Types.PackageSpec, target_path::String, sandbox_path::String, sandbox_project_override::Pkg.Types.Project; preferences::Dict{String, Any}, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool)
@ Pkg.Operations /opt/mamba/envs/mcd/share/julia/stdlib/v1.9/Pkg/src/Operations.jl:1748
[11] build_versions(ctx::Pkg.Types.Context, uuids::Set{Base.UUID}; verbose::Bool)
@ Pkg.Operations /opt/mamba/envs/mcd/share/julia/stdlib/v1.9/Pkg/src/Operations.jl:1134
[12] build_versions
@ /opt/mamba/envs/mcd/share/julia/stdlib/v1.9/Pkg/src/Operations.jl:1049 [inlined]
[13] build(ctx::Pkg.Types.Context, uuids::Set{Base.UUID}, verbose::Bool)
@ Pkg.Operations /opt/mamba/envs/mcd/share/julia/stdlib/v1.9/Pkg/src/Operations.jl:991
[14] build(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; verbose::Bool, kwargs::Base.Pairs{Symbol, Base.TTY, Tuple{Symbol}, NamedTuple{(:io,), Tuple{Base.TTY}}})
@ Pkg.API /opt/mamba/envs/mcd/share/julia/stdlib/v1.9/Pkg/src/API.jl:1053
[15] build(pkgs::Vector{Pkg.Types.PackageSpec}; io::Base.TTY, kwargs::Base.Pairs{Symbol, Union{}, Tuple{}, NamedTuple{(), Tuple{}}})
@ Pkg.API /opt/mamba/envs/mcd/share/julia/stdlib/v1.9/Pkg/src/API.jl:156
[16] build(pkgs::Vector{Pkg.Types.PackageSpec})
@ Pkg.API /opt/mamba/envs/mcd/share/julia/stdlib/v1.9/Pkg/src/API.jl:145
[17] #build#85
@ /opt/mamba/envs/mcd/share/julia/stdlib/v1.9/Pkg/src/API.jl:144 [inlined]
[18] build
@ /opt/mamba/envs/mcd/share/julia/stdlib/v1.9/Pkg/src/API.jl:144 [inlined]
[19] #build#84
@ /opt/mamba/envs/mcd/share/julia/stdlib/v1.9/Pkg/src/API.jl:143 [inlined]
[20] build(pkg::String)
@ Pkg.API /opt/mamba/envs/mcd/share/julia/stdlib/v1.9/Pkg/src/API.jl:143
[21] top-level scope
@ REPL[46]:1

`

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Direzione di ricerca

Start with PyCall's deps/build.jl at the failing call around line 79, then inspect Conda/src/Conda.jl around add and runconda. Reproduce with Pkg.build("PyCall") using the reported conda or mamba setup. Done means the build no longer passes an unsupported --satisfied-skip-solve argument and completes successfully.

Scritto dal modello di indicizzazione a partire dal testo della issue.

Valutazione

Stack tecnologico
julia, python
Ambito
build-system
Tipo di issue
Bug
Difficoltà
3/5
Tempo stimato
1-2 giorni
Stato di attività
Ferma
Chiarezza
Abbastanza chiara
Idoneità per principianti
35/100

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