Imageomics / Imageomics/pybioclip
Add parquet format as an output for embeddings?
- Dominant language
- Python
- Stars
- 67
- Forks
- 14
- PR merge metrics
- No merged PRs in 30d
Description
The [Embedding Explorer](https://github.com/Imageomics/emb-explorer) (and [image search](https://github.com/Imageomics/bioclip-image-search-lite)?) uses a Parquet database for input of vision embeddings. Maybe we should offer the option here to generate Parquet right here to reduce friction from getting from pybioclip output to Embedding Explorer input.
@netzissou thoughts? Is there a spec for required columns?
Contributor guide
No contributing guide indexed for this repository
Research direction
Start with the pybioclip CLI output path and inspect the Parquet input requirements of Embedding Explorer and image search. Confirm the required columns and output option with the issue participants; done means pybioclip can produce Parquet accepted by the referenced tools.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- python
- Domain
- data
- Issue type
- Feature
- Difficulty
- 4/5
- Estimated time
- 3-5 days
- Activity status
- Quiet
- Clarity
- Mostly clear
- Newbie friendliness
- 48/100