Imageomics / Imageomics/bioclip-vector-db

Incorporate per-rank scores with taxonomic predictions in the db metadata

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#12 2 comments 0 reactions 0 assignees View on GitHub
Dominant language
Python
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1
Forks
1
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Description

Extending #6, including the score on a per-rank basis by rolling up the species‑level probabilities in a single model pass should help the usability of this taxonomic info.

Contributor guide

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Research direction

Start by reading issue #6 and tracing how taxonomic predictions are currently represented in the database metadata. Define the per-rank score behavior from the species-level probabilities and verify that the scores are produced in one model pass and stored with the taxonomic information.

Written by the indexing model from the issue text.

Assessment

Tech stack
python
Domain
databases, machine-learning
Issue type
Feature
Difficulty
4/5
Estimated time
3-5 days
Activity status
Stale
Clarity
Mostly clear
Newbie friendliness
35/100

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