HenriquesLab/DL4MicEverywhere

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Bringing the ZeroCostDL4Mic experience running everywhere via easy-to-install docker images

Stars: 87
Forks: 17
Open beginner issues: 0
Indexed issues: 13

Dominant language: Jupyter Notebook
License: MIT
Last GitHub push: Sep 15, 2026
Latest indexed: Sep 20, 2026
Contributing guide: Contributing guide
Code of conduct: No code of conduct
Beginner labels: help wanted
PR merge metrics: No merged PRs in 30d

Beginner friendly Everything

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13 open issues indexed

Yolov2 notebook unable to run in Docker environment Open

bug

HenriquesLab/DL4MicEverywhere#59 · 1 comment · 1 assignee · Opened Oct 1, 2025
pix2pix_ZeroCostDL4Mic - Errors when launching from CLI Open

bug

HenriquesLab/DL4MicEverywhere#58 · 1 assignee · Opened Sep 26, 2025
BioImage Model Zoo model doesn't export Open

bug

HenriquesLab/DL4MicEverywhere#57 · 1 assignee · Opened Aug 18, 2025
UNET-3D notebook - very slow training, performance bottleneck ? Open

bug

HenriquesLab/DL4MicEverywhere#55 · 1 assignee · Opened Oct 31, 2024
StarDist_2D_ZeroCostDL4Mic.ipynb ImportError: cannot import name 'load_resource_description' from 'bioimageio.core' Open

bug

HenriquesLab/DL4MicEverywhere#54 · 1 assignee · Opened Sep 2, 2024
Error in U-Net_2D_Multilabel_ZeroCostDL4Mic.ipynb: IndexError: list index out of range Open

bug

HenriquesLab/DL4MicEverywhere#52 · 2 comments · 1 assignee · Opened Aug 26, 2024
ValueError: could not broadcast input array from shape (256,256,3) into shape (256,256) Open

bug

HenriquesLab/DL4MicEverywhere#50 · 2 comments · 1 assignee · Opened Aug 23, 2024
Install on HPC Cluster with Singularity Open

enhancement

HenriquesLab/DL4MicEverywhere#47 · 1 assignee · Opened Jun 19, 2024
Remote connection to servers with WIndows OS Open

enhancement

HenriquesLab/DL4MicEverywhere#44 · 13 comments · 2 assignees · Opened May 29, 2024
Single file executables Open

bug enhancement

HenriquesLab/DL4MicEverywhere#43 · 2 assignees · Opened May 20, 2024
error in window 10 Open

help wanted question

HenriquesLab/DL4MicEverywhere#32 · 3 comments · 1 assignee · Opened Feb 6, 2024
Rootless installation and running Open

enhancement

HenriquesLab/DL4MicEverywhere#31 · 1 assignee · Opened Jan 24, 2024
python versions constructor vs container dependencies Open

enhancement

HenriquesLab/DL4MicEverywhere#23 · 1 comment · 3 assignees · Opened Nov 17, 2023

HenriquesLab/DL4MicEverywhere

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