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DCAN-Labs

35 indexed repositories · View on GitHub

• abcd-hcp-pipeline

  bids application for processing functional MRI data, robust to scanner, acquisition and age variability.

  Python · 59 stars

• functional-random-forest

  Functional Analysis with Random Forests

  MATLAB · 22 stars

• compare_matrices_to_assign_networks

  MATLAB · 15 stars

• cifti-connectivity

  Script to generate correlation matrices from BOLD dense or parcellated time series data.

  MATLAB · 13 stars

• BIBSnet

  This BIDS App provides the utility of creating a nnU-Net anatomical MRI segmentation and mask with a infant brain trained model. It can ...

  Python · 13 stars

• dcan_bold_processing

  functional connectivity preprocessing for resting state fMRI outputs of the dcan-fmri-pipelines

  MATLAB · 9 stars

• file-mapper

  An easy tool to copy/move/symlink files from one directory to the other!

  Python · 8 stars

• infant-abcd-bids-pipeline

  Human infant pipeline, based on abcd-hcp-pipeline, to process fMRI data.

  Python · 8 stars

• DCAN-HCP

  The DCAN Lab's version of the minimal preprocessing pipeline for the Human Connectome Project

  Shell · 7 stars

• nhp-abcd-bids-pipeline

  Non-human primate (i.e., macaque) pipeline, based on abcd-hcp-pipeline, to process fMRI data.

  Python · 6 stars

• movement_regressors_power_plots

  Correction of respiratory artifacts in MRI head motion estimates

  MATLAB · 5 stars

• abcd-bids-tfmri-pipeline

  Pipeline to complete within-run and between-runs analyses of task-based fMRI dense timeseries data. This tool works with data that were m...

  Python · 4 stars

• dcan-macaque-pipeline

  The actual pipeline code, based on hcp, for non-human-primates - sp macaques.

  Shell · 3 stars

• cdni-brain

  readthedocs for CDNI collaborators and members

  3 stars

• CABINET

  CABINET is a utility that standardizes subsequent container execution. Emphasizing reproducibility, users can share JSONs to exactly repl...

  Python · 1 star

• abcd-hcp-pipeline_audit

  Python · 1 star

• SLURM_wrappers

  Bash and Python wrappers for SLURM that streamline HPC job submission, AWS S3 data transfers, and disk-based workflows; adaptable to any ...

  Shell · 1 star

• QSIPREP_HBCD_QC

  Tool to make QC images for HBCD's QSIPREP Output

  Python · 1 star

• hbcd_qmri_postproc

  Python · 1 star

• OSPREY_BIDS

  Houses the Dockerfile used to compile OSPREY

  Python · 1 star

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