Owner
DCAN-Labs
35 indexed repositories · View on GitHub
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abcd-hcp-pipeline
bids application for processing functional MRI data, robust to scanner, acquisition and age variability.
Python · 59 stars
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functional-random-forest
Functional Analysis with Random Forests
MATLAB · 22 stars
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MATLAB · 15 stars
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cifti-connectivity
Script to generate correlation matrices from BOLD dense or parcellated time series data.
MATLAB · 13 stars
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BIBSnet
This BIDS App provides the utility of creating a nnU-Net anatomical MRI segmentation and mask with a infant brain trained model. It can ...
Python · 13 stars
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dcan_bold_processing
functional connectivity preprocessing for resting state fMRI outputs of the dcan-fmri-pipelines
MATLAB · 9 stars
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file-mapper
An easy tool to copy/move/symlink files from one directory to the other!
Python · 8 stars
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infant-abcd-bids-pipeline
Human infant pipeline, based on abcd-hcp-pipeline, to process fMRI data.
Python · 8 stars
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DCAN-HCP
The DCAN Lab's version of the minimal preprocessing pipeline for the Human Connectome Project
Shell · 7 stars
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nhp-abcd-bids-pipeline
Non-human primate (i.e., macaque) pipeline, based on abcd-hcp-pipeline, to process fMRI data.
Python · 6 stars
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movement_regressors_power_plots
Correction of respiratory artifacts in MRI head motion estimates
MATLAB · 5 stars
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abcd-bids-tfmri-pipeline
Pipeline to complete within-run and between-runs analyses of task-based fMRI dense timeseries data. This tool works with data that were m...
Python · 4 stars
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dcan-macaque-pipeline
The actual pipeline code, based on hcp, for non-human-primates - sp macaques.
Shell · 3 stars
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cdni-brain
readthedocs for CDNI collaborators and members
3 stars
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CABINET
CABINET is a utility that standardizes subsequent container execution. Emphasizing reproducibility, users can share JSONs to exactly repl...
Python · 1 star
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Python · 1 star
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SLURM_wrappers
Bash and Python wrappers for SLURM that streamline HPC job submission, AWS S3 data transfers, and disk-based workflows; adaptable to any ...
Shell · 1 star
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QSIPREP_HBCD_QC
Tool to make QC images for HBCD's QSIPREP Output
Python · 1 star
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Python · 1 star
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OSPREY_BIDS
Houses the Dockerfile used to compile OSPREY
Python · 1 star
- 15 more repositories live on View on GitHub
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DCAN-Labs/MSI-utilities#16 · 0 comments · 0 reactions · 0 assignees ·
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DCAN-Labs/MSI-utilities#19 · 0 comments · 0 reactions · 0 assignees ·
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test issue Open
DCAN-Labs/LORIS_files#1 · 0 comments · 0 reactions · 0 assignees ·
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DCAN-Labs/abcd-hcp-pipeline_audit#4 · 0 comments · 0 reactions · 0 assignees ·
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DCAN-Labs/abcd-hcp-pipeline_audit#5 · 0 comments · 0 reactions · 0 assignees ·
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DCAN-Labs/dcan_rtd#7 · 0 comments · 0 reactions · 0 assignees ·
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DCAN-Labs/abcd-hcp-pipeline_audit#6 · 0 comments · 0 reactions · 0 assignees ·
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DCAN-Labs/dcan_rtd#8 · 0 comments · 0 reactions · 0 assignees ·
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DCAN-Labs/dcan_rtd#9 · 1 comment · 0 reactions · 0 assignees ·
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DCAN-Labs/abcd-hcp-pipeline_audit#8 · 1 comment · 0 reactions · 0 assignees ·
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DCAN-Labs/abcd-hcp-pipeline_audit#13 · 0 comments · 0 reactions · 0 assignees ·
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DCAN-Labs/DCAN-HCP#1 · 1 comment · 0 reactions · 1 assignee ·
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DCAN-Labs/audit-ABCC#1 · 0 comments · 0 reactions · 0 assignees ·
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enhancement
DCAN-Labs/CABINET#10 · 0 comments · 0 reactions · 1 assignee ·
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Add GitHub topics Open
DCAN-Labs/CABINET#11 · 0 comments · 0 reactions · 0 assignees ·
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Table of Contents Open
DCAN-Labs/functional-random-forest#1 · 1 comment · 0 reactions · 0 assignees ·
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DCAN-Labs/functional-random-forest#3 · 0 comments · 0 reactions · 0 assignees ·
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DCAN-Labs/functional-random-forest#4 · 0 comments · 0 reactions · 0 assignees ·
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DCAN-Labs/abcd-bids-tfmri-pipeline#1 · 0 comments · 0 reactions · 0 assignees ·
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DCAN-Labs/SLURM_wrappers#1 · 0 comments · 0 reactions · 0 assignees ·
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DCAN-Labs/SLURM_wrappers#3 · 0 comments · 0 reactions · 0 assignees ·
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Finish Links Open
DCAN-Labs/SLURM_wrappers#14 · 0 comments · 0 reactions · 0 assignees ·
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Generalize Wrappers Open
DCAN-Labs/SLURM_wrappers#15 · 0 comments · 0 reactions · 0 assignees ·
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DCAN-Labs/QSIPREP_HBCD_QC#4 · 0 comments · 0 reactions · 0 assignees ·
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DCAN-Labs/hbcd_qmri_postproc#2 · 0 comments · 0 reactions · 0 assignees ·
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Task time estimates Open
DCAN-Labs/loes-scoring-2#6 · 0 comments · 0 reactions · 0 assignees ·
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DCAN-Labs/loes-scoring-2#7 · 0 comments · 0 reactions · 0 assignees ·
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Add Error Message Openenhancement
DCAN-Labs/file-mapper#10 · 0 comments · 0 reactions · 4 assignees ·
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enhancement
DCAN-Labs/loes-scoring-2#8 · 0 comments · 0 reactions · 1 assignee ·
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enhancement
DCAN-Labs/file-mapper#14 · 0 comments · 0 reactions · 0 assignees ·
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enhancement
DCAN-Labs/file-mapper#17 · 0 comments · 0 reactions · 0 assignees ·
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DCAN-Labs/dcan_bold_processing#1 · 0 comments · 0 reactions · 0 assignees ·
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DCAN-Labs/dcan_bold_processing#25 · 0 comments · 0 reactions · 0 assignees ·
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DCAN-Labs/dcan-macaque-pipeline#3 · 0 comments · 0 reactions · 0 assignees ·
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DCAN-Labs/dcan_bold_processing#26 · 0 comments · 0 reactions · 0 assignees ·
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DCAN-Labs/dcan_bold_processing#28 · 4 comments · 0 reactions · 2 assignees ·
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DCAN-Labs/dcan-macaque-pipeline#5 · 2 comments · 0 reactions · 0 assignees ·
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DCAN-Labs/dcan_bold_processing#38 · 0 comments · 0 reactions · 0 assignees ·
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documentation
DCAN-Labs/OSPREY_BIDS#5 · 0 comments · 0 reactions · 0 assignees ·
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enhancement good first issue
DCAN-Labs/nhp-abcd-bids-pipeline#3 · 0 comments · 0 reactions · 0 assignees ·
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DCAN-Labs/nhp-abcd-bids-pipeline#4 · 1 comment · 0 reactions · 0 assignees ·
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DCAN-Labs/biceps_cmdln#1 · 0 comments · 0 reactions · 0 assignees ·
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DCAN-Labs/nhp-abcd-bids-pipeline#7 · 3 comments · 0 reactions · 0 assignees ·
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DCAN-Labs/nhp-abcd-bids-pipeline#9 · 0 comments · 0 reactions · 1 assignee ·
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enhancement
DCAN-Labs/nhp-abcd-bids-pipeline#10 · 0 comments · 0 reactions · 1 assignee ·
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T1w image not found Open
DCAN-Labs/infant-abcd-bids-pipeline#45 · 0 comments · 0 reactions · 0 assignees ·
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DCAN-Labs/infant-abcd-bids-pipeline#46 · 0 comments · 0 reactions · 0 assignees ·
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DCAN-Labs/abcd-hcp-pipeline#12 · 0 comments · 0 reactions · 0 assignees ·
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DCAN-Labs/abcd-hcp-pipeline#15 · 0 comments · 0 reactions · 0 assignees ·
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DCAN-Labs/abcd-hcp-pipeline#18 · 0 comments · 0 reactions · 0 assignees ·