Run FLU-avian just for Influenza type A
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- Dominant language
- Perl
- Stars
- 29
- Forks
- 3
- PR merge metrics
- No merged PRs in 30d
Description
Hi.
I'm running IRMA with the FLU-avian module using paired-end Illumina sequences. I like the final results of the algorithm, but I noticed, in the htop, that, during the executing of IRMA, some analysis are performed using Influenza type B profiles. I wonder if there is some option or configuration to not perform any analysis involving the Influenza type B data, in order to reduce the execution time of IRMA.
Thanks.
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First steps
- Read the whole issue, then the project's contributing guide.
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- Fork the repository and make your change on a branch.
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Research direction
Start by reviewing the FLU-avian module configuration and the IRMA execution path that selects Influenza type A and B profiles. Determine whether configuration can restrict analysis to type A, and verify that a type-A-only run completes successfully with reduced processing.
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Assessment
- Tech stack
- perl
- Domain
- bioinformatics
- Issue type
- Feature
- Difficulty
- 4/5
- Estimated time
- 3-5 days
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 35/100