BlueBrain / BlueBrain/atlas-interpolation
Handle correctly "strange" gene datasets
- Dominant language
- Python
- Stars
- 2
- Forks
- 1
- PR merge metrics
- No merged PRs in 30d
Description
`Vip/1103.npy` contains only one gene slice.
To Do:
- [ ] Consider warning the user once a `GeneVolume` is instantiated with this kind of dataset (empty or very small dataset - maybe we could also just output some metadata of the gene dataset).
- [ ] Prevent any problem of computation in `GeneInterpolate` and `GeneOpticalFlow`
Contributor guide
Research direction
Start with the `Vip/1103.npy` dataset and inspect how `GeneVolume` handles empty or single-slice inputs before tracing those inputs through `GeneInterpolate` and `GeneOpticalFlow`. Done means the dataset condition is reported appropriately and neither computation fails on empty or very small gene datasets.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- python
- Domain
- computer-vision, data
- Issue type
- Bug
- Difficulty
- 4/5
- Estimated time
- 3-5 days
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 35/100