BlueBrain / BlueBrain/atlas-interpolation

Handle correctly "strange" gene datasets

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Dominant language
Python
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Description

`Vip/1103.npy` contains only one gene slice.

To Do:

- [ ] Consider warning the user once a `GeneVolume` is instantiated with this kind of dataset (empty or very small dataset - maybe we could also just output some metadata of the gene dataset).
- [ ] Prevent any problem of computation in `GeneInterpolate` and `GeneOpticalFlow`

Contributor guide

Open the contributing guide

Research direction

Start with the `Vip/1103.npy` dataset and inspect how `GeneVolume` handles empty or single-slice inputs before tracing those inputs through `GeneInterpolate` and `GeneOpticalFlow`. Done means the dataset condition is reported appropriately and neither computation fails on empty or very small gene datasets.

Written by the indexing model from the issue text.

Assessment

Tech stack
python
Domain
computer-vision, data
Issue type
Bug
Difficulty
4/5
Estimated time
3-5 days
Activity status
Stale
Clarity
Needs clarification
Newbie friendliness
35/100

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