BlueBrain / BlueBrain/atlas-interpolation

Investigate section numbers of gene datasets

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Dominant language
Python
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2
Forks
1
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Description

`Vip/1102.json` has twice the same section number in his section_numbers list.

To Do:
- [ ] Investigate if there is something wrong with the computation of the section numbers
- [ ] Consider warning the user once a `GeneVolume` is instantiated with this kind of data
- [ ] Prevent any problem of computation in `GeneInterpolate` and `GeneOpticalFlow`

Contributor guide

Open the contributing guide

Research direction

Start with Vip/1102.json and trace how its section_numbers list is computed when a GeneVolume is instantiated. Then inspect the GeneInterpolate and GeneOpticalFlow entry points for assumptions about unique section numbers; done means the source of the duplicate is understood, users can be warned about invalid data, and both computations are protected from the problem.

Written by the indexing model from the issue text.

Assessment

Tech stack
python
Domain
data
Issue type
Bug
Difficulty
4/5
Estimated time
3-5 days
Activity status
Stale
Clarity
Needs clarification
Newbie friendliness
35/100

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