BlueBrain / BlueBrain/Deep-Atlas

GeneInterpolate not accepting border_predictions

Open
#71 0 comments 0 reactions 0 assignees View on GitHub
Dominant language
Python
Stars
4
Forks
2
PR merge metrics
No merged PRs in 30d

Description

I am getting this traceback when running full_pipeline.py
```
Traceback (most recent call last):
File "/gpfs/bbp.cscs.ch/project/proj148/atlas/Deep-Atlas/pipeline/full_pipeline.py", line 253, in
sys.exit(main(**kwargs))
File "/gpfs/bbp.cscs.ch/project/proj148/atlas/Deep-Atlas/pipeline/full_pipeline.py", line 240, in main
output_dir=interpolation_results_dir,
File "/gpfs/bbp.cscs.ch/project/proj148/atlas/Deep-Atlas/pipeline/interpolate_gene.py", line 186, in main
gene_dataset, interpolator_model, border_predictions=False
TypeError: __init__() got an unexpected keyword argument 'border_predictions'
```

I have the latest version of atlas-interpolator installed, but I guess it's using a version it installed inside the singularity environment? (I have no Idea how this works). If so, then the issue must be that that is out of date.

Contributor guide

No contributing guide indexed for this repository

Assessment

This issue has not been assessed yet.

Get new issues in your inbox

A short digest of beginner-friendly GitHub issues.