Owner
BiomedSciAI
10 indexed repositories · View on GitHub
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causallib
A Python package for modular causal inference analysis and model evaluations
Python · 837 stars
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histocartography
A standardized Python API with necessary preprocessing, machine learning and explainability tools to facilitate graph-analytics in comput...
Python · 273 stars
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fuse-med-ml
A python framework accelerating ML based discovery in the medical field by encouraging code reuse. Batteries included :)
Python · 159 stars
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biomed-multi-alignment
We introduce ibm/biomed.omics.bl.sm.ma-ted-458m. A biomedical foundation model trained over 2 billion biological samples across multiple ...
Jupyter Notebook · 127 stars
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biomed-multi-omic
Build foundation model for RNA or DNA data
Jupyter Notebook · 62 stars
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biomed-multi-view
This repository contains the implementation of the Multi-view Molecular Embedding with Late Fusion (MMELON) architecture. MMELON combines...
Python · 46 stars
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fuse-drug
FuseMedML based molecular biochemistry library for drug discovery/repurposing
Python · 25 stars
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r-BRICS
Revised breaking of retrosynthetically interesting chemical substructures (r-BRICS) – a revised BRICS module based on rdKit that breaks r...
Python · 19 stars
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gene-benchmark
Benchmark gene representations from different model families
Jupyter Notebook · 16 stars
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Jupyter Notebook · 9 stars
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pip install failed Open
BiomedSciAI/multimodal-models-toolkit#4 · 0 comments · 0 reactions · 0 assignees ·
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BiomedSciAI/histocartography#21 · 0 comments · 0 reactions · 0 assignees ·
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BiomedSciAI/histocartography#25 · 0 comments · 0 reactions · 0 assignees ·
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Normalized array is overwritten when after creating GaussianTissueMask with downsampling_factor = 1 Open
BiomedSciAI/histocartography#26 · 0 comments · 0 reactions · 0 assignees ·
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BiomedSciAI/histocartography#36 · 1 comment · 0 reactions · 0 assignees ·
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BiomedSciAI/histocartography#38 · 5 comments · 0 reactions · 0 assignees ·
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BiomedSciAI/histocartography#40 · 1 comment · 0 reactions · 0 assignees ·
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BiomedSciAI/histocartography#45 · 0 comments · 0 reactions · 0 assignees ·
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BiomedSciAI/histocartography#46 · 0 comments · 0 reactions · 0 assignees ·
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BiomedSciAI/histocartography#49 · 1 comment · 0 reactions · 0 assignees ·
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BiomedSciAI/histocartography#50 · 0 comments · 0 reactions · 0 assignees ·
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BiomedSciAI/histocartography#51 · 0 comments · 0 reactions · 0 assignees ·
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BiomedSciAI/histocartography#52 · 0 comments · 0 reactions · 0 assignees ·
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BiomedSciAI/histocartography#53 · 11 comments · 2 reactions · 0 assignees ·
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BiomedSciAI/histocartography#57 · 2 comments · 2 reactions · 0 assignees ·
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Pypi Installer issue Open
BiomedSciAI/histocartography#58 · 0 comments · 0 reactions · 0 assignees ·
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Error Open
BiomedSciAI/histocartography#59 · 4 comments · 0 reactions · 0 assignees ·
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BiomedSciAI/histocartography#60 · 0 comments · 0 reactions · 0 assignees ·
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BiomedSciAI/histocartography#61 · 0 comments · 0 reactions · 0 assignees ·
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BiomedSciAI/r-BRICS#1 · 1 comment · 0 reactions · 0 assignees ·
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BiomedSciAI/gene-benchmark#46 · 2 comments · 0 reactions · 0 assignees ·
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BiomedSciAI/gene-benchmark#47 · 1 comment · 0 reactions · 0 assignees ·
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BiomedSciAI/biomed-multi-view#9 · 0 comments · 0 reactions · 0 assignees ·
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BiomedSciAI/biomed-multi-view#13 · 0 comments · 0 reactions · 0 assignees ·
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BiomedSciAI/biomed-multi-view#14 · 0 comments · 0 reactions · 0 assignees ·
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BiomedSciAI/biomed-multi-view#15 · 0 comments · 0 reactions · 0 assignees ·
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BiomedSciAI/fuse-drug#2 · 0 comments · 0 reactions · 0 assignees ·
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BiomedSciAI/fuse-drug#24 · 0 comments · 0 reactions · 1 assignee ·
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BiomedSciAI/fuse-drug#59 · 0 comments · 0 reactions · 0 assignees ·
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enhancement
BiomedSciAI/fuse-drug#96 · 0 comments · 0 reactions · 2 assignees ·
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bug
BiomedSciAI/fuse-drug#97 · 1 comment · 1 reaction · 0 assignees ·
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bug
BiomedSciAI/fuse-drug#99 · 0 comments · 0 reactions · 0 assignees ·
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bug
BiomedSciAI/fuse-drug#105 · 5 comments · 0 reactions · 2 assignees ·
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BiomedSciAI/fuse-drug#113 · 0 comments · 0 reactions · 0 assignees ·
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BiomedSciAI/fuse-drug#125 · 0 comments · 0 reactions · 0 assignees ·
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BiomedSciAI/fuse-drug#133 · 0 comments · 0 reactions · 1 assignee ·
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Trained Model Open
BiomedSciAI/fuse-med-ml#35 · 1 comment · 0 reactions · 0 assignees ·
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BiomedSciAI/fuse-med-ml#57 · 0 comments · 0 reactions · 1 assignee ·
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BiomedSciAI/fuse-med-ml#73 · 0 comments · 0 reactions · 1 assignee ·
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Cache options Open
BiomedSciAI/fuse-med-ml#76 · 2 comments · 0 reactions · 1 assignee ·
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enhancement
BiomedSciAI/fuse-med-ml#109 · 0 comments · 0 reactions · 0 assignees ·
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enhancement
BiomedSciAI/fuse-med-ml#142 · 0 comments · 0 reactions · 0 assignees ·
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README budges. Openenhancement good first issue
BiomedSciAI/fuse-med-ml#153 · 2 comments · 0 reactions · 1 assignee ·
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Model deploy Openenhancement
BiomedSciAI/fuse-med-ml#162 · 0 comments · 0 reactions · 0 assignees ·
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enhancement good first issue
BiomedSciAI/fuse-med-ml#163 · 1 comment · 0 reactions · 0 assignees ·
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enhancement
BiomedSciAI/fuse-med-ml#180 · 1 comment · 0 reactions · 1 assignee ·
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enhancement good first issue
BiomedSciAI/fuse-med-ml#185 · 1 comment · 0 reactions · 0 assignees ·
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documentation enhancement good first issue
BiomedSciAI/fuse-med-ml#189 · 7 comments · 0 reactions · 1 assignee ·
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ViT Open
BiomedSciAI/fuse-med-ml#203 · 0 comments · 0 reactions · 1 assignee ·
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enhancement
BiomedSciAI/fuse-med-ml#212 · 0 comments · 0 reactions · 0 assignees ·