Owner

AllenNeuralDynamics

已索引 236 个仓库 · 在 GitHub 查看

• aind-ephys-pipeline

  AIND pipeline for processing extracellular electrophysiology data

  Nextflow · 41 个 star

• aind-data-schema

  A library that defines AIND data schema and validates JSON.

  Python · 34 个 star

• openscope-community-predictive-processing

  This repository serves as a hub for community-driven contributions, documentation, and project tracking of the OpenScope Predictive Proce...

  Python · 26 个 star

• aind-ephys-spikesort-kilosort25-full

  CodeOcean capsule for full electrophysiology analysis pipeline using Kilosort2.5 via SpikeInterface.

  Python · 14 个 star

• aind-large-scale-cellpose

  Large-scale cell segmentation with cellpose.

  Python · 10 个 star

• Rhapso

  An open-source Python toolkit for large-scale fluorescence microscopy data alignment and fusion.

  Python · 9 个 star

• dynamic-foraging-task

  Bonsai/Harp workflow for Dynamic Foraging with Python GUI for visualization and control

  Python · 7 个 star

• aind-smartspim-pipeline

  Repository that hosts the SmartSPIM pipeline code

  Nextflow · 6 个 star

• TigerASI

  a lightweight python interface for ASI brand Tiger Controllers

  Python · 5 个 star

• wavpack-numcodecs

  Numcodecs implementation of the WavPack audio codec

  C · 5 个 star

• anivia

  Fork of VGG VIA to better support annotation of animal pose images

  JavaScript · 4 个 star

• harp.device.treadmill-driver

  0326: a Harp-compatible device for controlling an instrumented mouse treadmill

  Jupyter Notebook · 4 个 star

• voxel-classic

  General purpose microscope control repository

  Python · 4 个 star

• view

  Model/View for exa-spim

  Python · 4 个 star

• harp.device.lickety-split

  0360: an ephys-compliant capacitive lick detector

  C++ · 4 个 star

• runze-control

  Python Driver for Aurora Pro Scientific (aka Runze Fluid) syringe pumps

  Python · 4 个 star

• parallax

  Automatic detection of probe position from multiple camera views

  Python · 4 个 star

• aind-SmartSPIM-segmentation

  segmentation module for SmartSPIM cloud pipeline

  Python · 4 个 star

• aind-smartspim-stitch

  Stitching and fusion pipeline in the cloud

  Python · 4 个 star

• aind-smartspim-ccf-registration

  Registration of lightsheet whole brain images to the Allen CCF V3 Atlas

  Python · 4 个 star

• 还有 216 个仓库在 在 GitHub 查看