Proprietario
AllenNeuralDynamics
236 repository indicizzati · Vedi su GitHub
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aind-ephys-pipeline
AIND pipeline for processing extracellular electrophysiology data
Nextflow · 41 stelle
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aind-data-schema
A library that defines AIND data schema and validates JSON.
Python · 34 stelle
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openscope-community-predictive-processing
This repository serves as a hub for community-driven contributions, documentation, and project tracking of the OpenScope Predictive Proce...
Python · 26 stelle
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aind-ephys-spikesort-kilosort25-full
CodeOcean capsule for full electrophysiology analysis pipeline using Kilosort2.5 via SpikeInterface.
Python · 14 stelle
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aind-large-scale-cellpose
Large-scale cell segmentation with cellpose.
Python · 10 stelle
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Rhapso
An open-source Python toolkit for large-scale fluorescence microscopy data alignment and fusion.
Python · 9 stelle
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dynamic-foraging-task
Bonsai/Harp workflow for Dynamic Foraging with Python GUI for visualization and control
Python · 7 stelle
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aind-smartspim-pipeline
Repository that hosts the SmartSPIM pipeline code
Nextflow · 6 stelle
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TigerASI
a lightweight python interface for ASI brand Tiger Controllers
Python · 5 stelle
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wavpack-numcodecs
Numcodecs implementation of the WavPack audio codec
C · 5 stelle
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anivia
Fork of VGG VIA to better support annotation of animal pose images
JavaScript · 4 stelle
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harp.device.treadmill-driver
0326: a Harp-compatible device for controlling an instrumented mouse treadmill
Jupyter Notebook · 4 stelle
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voxel-classic
General purpose microscope control repository
Python · 4 stelle
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view
Model/View for exa-spim
Python · 4 stelle
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harp.device.lickety-split
0360: an ephys-compliant capacitive lick detector
C++ · 4 stelle
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runze-control
Python Driver for Aurora Pro Scientific (aka Runze Fluid) syringe pumps
Python · 4 stelle
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parallax
Automatic detection of probe position from multiple camera views
Python · 4 stelle
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aind-SmartSPIM-segmentation
segmentation module for SmartSPIM cloud pipeline
Python · 4 stelle
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aind-smartspim-stitch
Stitching and fusion pipeline in the cloud
Python · 4 stelle
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aind-smartspim-ccf-registration
Registration of lightsheet whole brain images to the Allen CCF V3 Atlas
Python · 4 stelle
- 216 altri repository si trovano su Vedi su GitHub
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AllenNeuralDynamics/exaSpim-UI#7 · 0 commenti · 0 reazioni · 1 assegnatario ·
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AllenNeuralDynamics/exaSpim-UI#8 · 0 commenti · 0 reazioni · 0 assegnatari ·
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AllenNeuralDynamics/iSpim-control#11 · 0 commenti · 0 reazioni · 0 assegnatari ·
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AllenNeuralDynamics/iSpim-control#12 · 2 commenti · 0 reazioni · 1 assegnatario ·
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AllenNeuralDynamics/iSpim-control#13 · 2 commenti · 0 reazioni · 1 assegnatario ·
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AllenNeuralDynamics/iSpim-control#14 · 0 commenti · 0 reazioni · 2 assegnatari ·
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AllenNeuralDynamics/iSpim-control#19 · 0 commenti · 0 reazioni · 0 assegnatari ·
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AllenNeuralDynamics/iSpim-control#20 · 0 commenti · 0 reazioni · 0 assegnatari ·
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!!! enhancement minor
AllenNeuralDynamics/foraging-ephys-browser#2 · 0 commenti · 0 reazioni · 1 assegnatario ·
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!!! enhancement major
AllenNeuralDynamics/foraging-ephys-browser#3 · 0 commenti · 0 reazioni · 1 assegnatario ·
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!! bug
AllenNeuralDynamics/foraging-ephys-browser#6 · 0 commenti · 0 reazioni · 1 assegnatario ·
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!!! major
AllenNeuralDynamics/foraging-ephys-browser#7 · 0 commenti · 0 reazioni · 0 assegnatari ·
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AllenNeuralDynamics/aind-exaSPIM-java-utils#1 · 0 commenti · 0 reazioni · 0 assegnatari ·
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AllenNeuralDynamics/instrument-widgets#3 · 1 commento · 0 reazioni · 0 assegnatari ·
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Change repo name Aperta
AllenNeuralDynamics/instrument-widgets#4 · 0 commenti · 0 reazioni · 0 assegnatari ·
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AllenNeuralDynamics/instrument-widgets#5 · 0 commenti · 0 reazioni · 0 assegnatari ·
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AllenNeuralDynamics/instrument-widgets#6 · 0 commenti · 0 reazioni · 0 assegnatari ·
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Change z_widgets name Aperta
AllenNeuralDynamics/instrument-widgets#7 · 0 commenti · 0 reazioni · 0 assegnatari ·
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AllenNeuralDynamics/instrument-widgets#8 · 0 commenti · 0 reazioni · 0 assegnatari ·
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make filter wheel better Aperta
AllenNeuralDynamics/instrument-widgets#9 · 0 commenti · 0 reazioni · 0 assegnatari ·
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property browser operations Aperta
AllenNeuralDynamics/instrument-widgets#10 · 0 commenti · 0 reazioni · 0 assegnatari ·
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enhancement
AllenNeuralDynamics/aind-ng-link#9 · 0 commenti · 0 reazioni · 1 assegnatario ·
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AllenNeuralDynamics/aind-ng-link#30 · 1 commento · 0 reazioni · 1 assegnatario ·
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AllenNeuralDynamics/aind-registration_evaluation#3 · 0 commenti · 0 reazioni · 1 assegnatario ·
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AllenNeuralDynamics/aind-registration_evaluation#5 · 0 commenti · 0 reazioni · 1 assegnatario ·
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AllenNeuralDynamics/aind-registration_evaluation#6 · 2 commenti · 0 reazioni · 1 assegnatario ·
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AllenNeuralDynamics/aind-registration_evaluation#7 · 0 commenti · 0 reazioni · 1 assegnatario ·
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AllenNeuralDynamics/aind-registration_evaluation#15 · 0 commenti · 0 reazioni · 1 assegnatario ·
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Sample on Falling Edge? Aperta
AllenNeuralDynamics/rp2040.pio-ads7049#1 · 1 commento · 0 reazioni · 0 assegnatari ·
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DMA cleanup Aperta
AllenNeuralDynamics/rp2040.pio-ads7049#2 · 0 commenti · 0 reazioni · 0 assegnatari ·
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Write validation tests Aperta
AllenNeuralDynamics/aind-smartspim-validation#1 · 0 commenti · 0 reazioni · 1 assegnatario ·
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AllenNeuralDynamics/aind-ophys-bergamo-stitcher#4 · 0 commenti · 0 reazioni · 1 assegnatario ·
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Add model fittings Aperta
AllenNeuralDynamics/aind-foraging-behavior-bonsai-basic#12 · 0 commenti · 0 reazioni · 1 assegnatario ·
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add lick stats plots Aperta
AllenNeuralDynamics/aind-foraging-behavior-bonsai-basic#14 · 0 commenti · 0 reazioni · 1 assegnatario ·
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Runlength analysis Aperta
AllenNeuralDynamics/aind-foraging-behavior-bonsai-basic#15 · 0 commenti · 0 reazioni · 1 assegnatario ·
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RL models Aperta
AllenNeuralDynamics/aind-foraging-behavior-bonsai-basic#16 · 0 commenti · 0 reazioni · 1 assegnatario ·
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AllenNeuralDynamics/aind-foraging-behavior-bonsai-basic#18 · 0 commenti · 0 reazioni · 1 assegnatario ·
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enhancement
AllenNeuralDynamics/aind-foraging-behavior-bonsai-basic#22 · 0 commenti · 0 reazioni · 0 assegnatari ·
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enhancement
AllenNeuralDynamics/aind-foraging-behavior-bonsai-basic#23 · 1 commento · 0 reazioni · 1 assegnatario ·
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bug
AllenNeuralDynamics/aind-foraging-behavior-bonsai-basic#34 · 0 commenti · 0 reazioni · 1 assegnatario ·
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enhancement
AllenNeuralDynamics/mfishtoolspy#1 · 0 commenti · 0 reazioni · 0 assegnatari ·
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Dealing with large datasets Apertaenhancement
AllenNeuralDynamics/mfishtoolspy#3 · 0 commenti · 0 reazioni · 1 assegnatario ·
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AllenNeuralDynamics/mfishtoolspy#4 · 0 commenti · 0 reazioni · 0 assegnatari ·
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AllenNeuralDynamics/aind-ophys-roicat-session-matching#1 · 0 commenti · 0 reazioni · 0 assegnatari ·
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AllenNeuralDynamics/aind-ophys-roicat-session-matching#2 · 0 commenti · 0 reazioni · 0 assegnatari ·
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switch to tracking pipeline Aperta
AllenNeuralDynamics/aind-ophys-roicat-session-matching#7 · 0 commenti · 0 reazioni · 0 assegnatari ·
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Out-of-memory failure Aperta
AllenNeuralDynamics/aind-ophys-roicat-session-matching#8 · 0 commenti · 0 reazioni · 0 assegnatari ·
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AllenNeuralDynamics/aind-ophys-roicat-session-matching#9 · 2 commenti · 0 reazioni · 0 assegnatari ·
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Add debug mode Aperta
AllenNeuralDynamics/aind-ophys-mesoscope-image-splitter#1 · 0 commenti · 0 reazioni · 2 assegnatari ·
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AllenNeuralDynamics/aind-ophys-mesoscope-image-splitter#2 · 2 commenti · 0 reazioni · 1 assegnatario ·