AllenNeuralDynamics / AllenNeuralDynamics/aind-smartspim-destripe

Improve foreground detection

Aberta
#2 0 comentários 0 reações 1 responsável Reivindicada por @camilolaiton Ver no GitHub
Linguagem predominante
Python
Estrelas
1
Forks
3
Merge médio
4d 4h
PRs com merge (30d)
1

Descrição

At the moment, we are using parameters that were calculated for a set of SmartSPIM datasets to be able to detect foreground based on image intensity from the microscope. This was a quick fix to be able to process as quickly as possible imaged datasets without worrying too much about image quality at that moment due to further experimentation.

However, these parameters will not fit when the microscope/inmunolabeling/clearing is updated. We need to find a dynamic way to get the foreground threshold for each dataset. This will improve image quality after filtering with wavelet decomposition.

Guia de contribuição

Nenhum guia de contribuição indexado para este repositório

Avaliação

Esta issue ainda não foi avaliada.

Receba novas issues na sua caixa de entrada

Um resumo curto de issues do GitHub para quem está começando.