AlexsLemonade / AlexsLemonade/refinebio

Dataset Request ERP105482

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dataset request
Dominant language
Python
Stars
135
Forks
21
PR merge metrics
No merged PRs in 30d

Description

### Context

A user requested [ERP105482](https://www.refine.bio/experiments/ERP105482/biomarkers-of-response-and-resistance-to-checkpoint-blockade-immunotherapy-in-metastatic-melanoma).

### Problem or idea

[ERP105482](https://www.refine.bio/experiments/ERP105482/biomarkers-of-response-and-resistance-to-checkpoint-blockade-immunotherapy-in-metastatic-melanoma) seems to have been run back in July of last year when we were having problems with jobs being OOM-killed. It looks like 3 times the job failed because it was OOM-killed and one time the downloader threw an exception.

### Solution or next step

Maybe try again? Either we have fixed these bugs or we should fix them, because it does not seem like the issues are related to this particular sample.

Contributor guide

No contributing guide indexed for this repository

Research direction

Start by retrying the ERP105482 experiment and reviewing the three OOM-killed jobs and the downloader exception described in the issue. Done means the experiment downloads and processes successfully, or the underlying failure is reproduced and fixed so the dataset becomes available.

Written by the indexing model from the issue text.

Assessment

Tech stack
python
Domain
data-engineering
Issue type
Bug
Difficulty
4/5
Estimated time
3-5 days
Activity status
Stale
Clarity
Needs clarification
Newbie friendliness
35/100

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