AlexsLemonade / AlexsLemonade/refinebio
Dataset Request ERP105482
- Dominant language
- Python
- Stars
- 135
- Forks
- 21
- PR merge metrics
- No merged PRs in 30d
Description
### Context
A user requested [ERP105482](https://www.refine.bio/experiments/ERP105482/biomarkers-of-response-and-resistance-to-checkpoint-blockade-immunotherapy-in-metastatic-melanoma).
### Problem or idea
[ERP105482](https://www.refine.bio/experiments/ERP105482/biomarkers-of-response-and-resistance-to-checkpoint-blockade-immunotherapy-in-metastatic-melanoma) seems to have been run back in July of last year when we were having problems with jobs being OOM-killed. It looks like 3 times the job failed because it was OOM-killed and one time the downloader threw an exception.
### Solution or next step
Maybe try again? Either we have fixed these bugs or we should fix them, because it does not seem like the issues are related to this particular sample.
Contributor guide
No contributing guide indexed for this repository
Research direction
Start by retrying the ERP105482 experiment and reviewing the three OOM-killed jobs and the downloader exception described in the issue. Done means the experiment downloads and processes successfully, or the underlying failure is reproduced and fixed so the dataset becomes available.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- python
- Domain
- data-engineering
- Issue type
- Bug
- Difficulty
- 4/5
- Estimated time
- 3-5 days
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 35/100