AlexsLemonade / AlexsLemonade/refinebio
Request for Candida albicans data
@kurtwheeler is already working on this.
Since Sep 28, 2020.
- Dominant language
- Python
- Stars
- 135
- Forks
- 21
- PR merge metrics
- No merged PRs in 30d
Description
Context
I was just looking around refine.bio and seeing which organisms were included and looked to see if Candida albicans was there since it is one of the model organisms I study.
Problem or idea
Will we be able to get Candida albicans data? I looked for it but didn't find it in the normalized compendia, RNA-seq compendia or by searching for sample.
Solution or next step
If the issue is with taxonomy IDs (or deciding which to include under the Candida albicans umbrella), maybe I can help. There should be over 2,000 samples on SRA so I think it would be organisms worth including from the perspective of the microbiological community.
Contributor guide
No contributing guide indexed for this repository
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Assessment
This issue has not been assessed yet.