Add configuration options for filtering

**Description**
Currently hooks lacks proper timeout support.

**Proposed solution**
Add configurable timeout with sensible defaults.

**Priority**: Low/Medium

Start by locating the hooks implementation and its existing configuration or timeout handling; the issue does not name specific files or tests. Clarify how filtering relates to the requested timeout, then verify that the timeout is configurable, has sensible defaults, and applies to hooks as intended.

Written by the indexing model from the issue text.