wikipathways / wikipathways/WikiPathwaysCurator
things cannot be RNA and protein at the same type
Open
Nobody has claimed this yet.
- Dominant language
- Java
- Stars
- 1
- Forks
- 2
- PR merge metrics
- No merged PRs in 30d
Description
SELECT (COUNT(DISTINCT ?entity) AS ?count)
WHERE {
?entity a wp:Rna .
?entity a wp:Protein .
?entity dcterms:isPartOf ?pathway .
?pathway a wp:Pathway ;
wp:ontologyTag <http://vocabularies.wikipathways.org/wp#Curation:AnalysisCollection> ;
wp:organismName "Homo sapiens"^^xsd:string .
}
Contributor guide
No contributing guide indexed for this repository
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start with the SPARQL query in the issue and inspect the repository's Java unit tests that validate WikiPathways content. Determine where conflicting Rna and Protein classifications are checked and identify the expected validation behavior. Done means the reported contradiction is covered by a reproducible test and the validation handles it consistently.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- java
- Domain
- databases
- Issue type
- Bug
- Difficulty
- 3/5
- Estimated time
- 1-2 days
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 30/100