wikipathways / wikipathways/WikiPathwaysCurator
GPML interaction anchors without connection
Open
Nobody has claimed this yet.
enhancement
question
- Dominant language
- Java
- Stars
- 1
- Forks
- 2
- PR merge metrics
- No merged PRs in 30d
Description
Some GPML files contain interactions with anchors that do not connect to anything, which leads to errors converting the GPML into SVG. Can a test be included to remove those unconnected anchors? They do not seem to be used for anything.
Contributor guide
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First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start by locating the GPML-to-SVG conversion code and its existing tests, then reproduce the failure with an interaction containing an unconnected anchor. Add coverage showing that such anchors are removed and conversion completes without errors; the test should pass for the reported GPML case.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- java
- Domain
- testing-qa
- Issue type
- Bug
- Difficulty
- 3/5
- Estimated time
- 1-2 days
- Activity status
- Stale
- Clarity
- Mostly clear
- Newbie friendliness
- 45/100