weecology / weecology/DeepForest
Training fails if no bounding boxes remain in patch after affine transformation
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- Python
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Description
Using A.Affine like so:
def get_transform(augment) -> A.Compose or ToTensorV2:
"""This is the new transform"""
if augment:
transform = A.Compose(
[
A.Affine(rotate=(-180, 180), rotate_method="ellipse", p=0.60, mode=cv2.BORDER_REFLECT_101),
ToTensorV2(),
],
bbox_params=A.BboxParams(format="pascal_voc", label_fields=["category_ids"]),
)
else:
transform = ToTensorV2()
return transform
When this transformation rotates all bounding boxes outside of the patch, leaving no boxes inside, training will result in an index error:
IndexError: tensors used as indices must be long, int, byte or bool tensors
I've fixed this one at the dataset level by having a child dataset class repeat the transform until there is an image with a bounding box:
name, image, targets = super().__getitem__(idx)
while targets["boxes"].size()[0] == 0:
name, image, targets = super().__getitem__(idx)
return name, image, targets
This could also be fixed by setting the target tensor dtype to int, but having negative samples severely degredates the perfomance on my dataset so I've done it this way.
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start with the dataset getitem path that consumes A.Affine and ToTensorV2 outputs, then reproduce the case where all bounding boxes leave the patch. Check how an empty targets["boxes"] tensor reaches training and verify that training no longer raises the reported IndexError when no boxes remain.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- python, pytorch
- Domain
- machine-learning
- Issue type
- Bug
- Difficulty
- 3/5
- Estimated time
- 1-2 days
- Activity status
- Stale
- Clarity
- Mostly clear
- Newbie friendliness
- 45/100