valentynbez / valentynbez/tmvec

Missing dependency "click" upon install

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Description

Hi! There appears to be a missing dependency when I install tmvec. I resolved the issue by installing click separately but thought you should know.

(tmvec) alyssa@coral:~/tools$ tmvec
Traceback (most recent call last):
  File "/home/alyssa/miniforge3/envs/tmvec/bin/tmvec", line 3, in <module>
    from tmvec.cli import main
  File "/home/alyssa/miniforge3/envs/tmvec/lib/python3.13/site-packages/tmvec/cli.py", line 6, in <module>
    import click
ModuleNotFoundError: No module named 'click'

(tmvec) alyssa@coral:~/tools$ pip install click
Collecting click
  Downloading click-8.3.0-py3-none-any.whl.metadata (2.6 kB)
Downloading click-8.3.0-py3-none-any.whl (107 kB)
Installing collected packages: click
Successfully installed click-8.3.0

(tmvec) alyssa@coral:~/tools$ tmvec
Usage: tmvec [OPTIONS] COMMAND [ARGS]...
 tmvec: A tool for quick identification of remote homologues via protein
embeddings

Contributor guide

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First steps

  1. Read the whole issue, then the project's contributing guide.
  2. Comment on the issue to say you are picking it up — it saves two people doing the same work.
  3. Fork the repository and make your change on a branch.
  4. Open a pull request that references the issue number.

Research direction

Start by checking how tmvec declares install dependencies and compare that with the click import shown in tmvec/cli.py. Add click to the package dependencies, then reinstall tmvec in a clean environment and run the tmvec command to confirm it starts without manually installing click.

Written by the indexing model from the issue text.

Assessment

Tech stack
python
Domain
build-system, cli
Issue type
Bug
Difficulty
2/5
Estimated time
1-3 hours
Activity status
Stale
Clarity
Mostly clear
Newbie friendliness
48/100

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