Submitting Jupyter notebooks with sbatch on cheaha
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- Dominant language
- Python
- Stars
- 24
- Forks
- 15
- Avg merge
- 10d 3h
- Merged PRs (30d)
- 1
Description
What would you like to see added?
We can use Slurm to submit a Jupyter Notebook input file as a job and track the output in a Jupyter Notebook format:
The below script executes a Jupyter Notebook (for instance, input file even.ipynb) and saves the output in a notebook format (for instance, even_result.ipynb).
jupyter nbconvert --to notebook --execute even.ipynb --output even_result.ipynb
Contributor guide
No contributing guide indexed for this repository
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start by reviewing the repository’s existing documentation for Slurm jobs and Jupyter notebooks to determine where this example belongs. Use the provided nbconvert command as the basis for the example; done means the documentation explains submitting an .ipynb with sbatch and saving the executed output as a notebook.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- jupyter-notebook
- Domain
- documentation, hpc
- Issue type
- Documentation
- Difficulty
- 2/5
- Estimated time
- 1-3 hours
- Activity status
- Stale
- Clarity
- Mostly clear
- Newbie friendliness
- 42/100