tslearn-team / tslearn-team/tslearn
Silhouette Score takes close to exponential time when using dtw/soft-dtw
Nobody has claimed this yet.
- Dominant language
- Python
- Stars
- 3.2k
- Forks
- 384
- Avg merge
- 3d 12h
- Merged PRs (30d)
- 11
Description
Hi, I am trying to train my model on 25,000 rows of time series data with each row having data for over 60 time-intervals. It is taking 2+ hours to fit and predict using kMeans & soft-dtw as distance metric. However, since I need to find optimal number of clusters, I need to run the algorithm for clusters 3-10 and calculate silhouette score each time.
Calculation of silhouette score is taking 3+ hours. Is there a way to speed this up? Also, how can I speed up this entire process?
How can I parallelize both soft-dtw and silhouette score?
Any suggestions would be much appreciated.
Thanks!
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start by profiling the silhouette-score calculation and the soft-DTW path used with kMeans on the reported 25,000-by-60 data. Compare runtime across cluster counts 3–10 and investigate whether parallelization changes the bottleneck. Done would require a specific, validated performance improvement, but the issue does not identify files or tests.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- python
- Domain
- machine-learning, performance
- Issue type
- Bug
- Difficulty
- 5/5
- Estimated time
- Over a week
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 20/100