some point view for DirectedSphereExclusion selested number relate to #152
@marco-2023 is already working on this.
Since Aug 20, 2024.
- Dominant language
- Jupyter Notebook
- Stars
- 42
- Forks
- 27
- PR merge metrics
- No merged PRs in 30d
Description
In the DirectedSphereExclusion method, the setected number is related to r(radius). When r is larger, we will get fewer molecules; otherwise we will get more molecules. The function optimize_radius of utils.py is used to optimize r through iteration. ( When selected number is larger, we decrease r; otherwise we can increase r. )
But in the case which we choose 12 points in 3 clusters by using DirectedSphereExclusion, the setected number is sensitive to r which causes the oscillation of selected number. We can see when r > 1.919372827, the selected number = 3; when r $\leq$ 1.919372826, the selected number = 5. ( Which means existing two points which are "close" enough. )
| iteration_number | 0 | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 16 | 17 | 18 | 19 | 20 | 21 | 22 | 23 | 24 | 25 | 26 | 27 | 28 | 29 | 30 | 31 | 32 | 33 | 34 | 35 | 36 | 37 | 38 | 39 | 40 | 41 | 42 | 43 | 44 | 45 | 46 | 47 | 48 | 49 | 50 | 51 | 52 | 53 | 54 | 55 | 56 | 57 | 58 | 59 | 60 | 61 | 62 | 63 | 64 | 65 | 66 | 67 | 68 | 69 | 70 | 71 | 72 | 73 | 74 | 75 | 76 | 77 | 78 | 79 | 80 | 81 | 82 | 83 | 84 | 85 | 86 | 87 | 88 | 89 | 90 | 91 | 92 | 93 | 94 | 95 | 96 | 97 | 98 | 99 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| selected_number | 2 | 2 | 3 | 3 | 5 | 3 | 3 | 5 | 3 | 5 | 5 | 5 | 5 | 5 | 5 | 3 | 3 | 3 | 5 | 5 | 5 | 5 | 5 | 3 | 3 | 5 | 5 | 3 | 3 | 3 | 3 | 5 | 3 | 3 | 5 | 3 | 5 | 3 | 3 | 3 | 5 | 5 | 5 | 3 | 5 | 5 | 5 | 5 | 3 | 5 | 3 | 5 | 3 | 5 | 3 | 3 | 3 | 3 | 3 | 3 | 3 | 3 | 3 | 3 | 3 | 3 | 3 | 3 | 3 | 3 | 3 | 3 | 3 | 3 | 3 | 3 | 3 | 3 | 3 | 3 | 3 | 3 | 3 | 3 | 3 | 3 | 3 | 3 | 3 | 3 | 3 | 3 | 3 | 3 | 3 | 3 | 3 | 3 | 3 | 3 |
| r | 3.573701539 | 2.680276154 | 2.233563462 | 2.010207116 | 1.898528943 | 1.954368029 | 1.926448486 | 1.912488714 | 1.9194686 | 1.915978657 | 1.917723629 | 1.918596114 | 1.919032357 | 1.919250479 | 1.919359539 | 1.91941407 | 1.919386805 | 1.919373172 | 1.919366356 | 1.919369764 | 1.919371468 | 1.91937232 | 1.919372746 | 1.919372959 | 1.919372852 | 1.919372799 | 1.919372826 | 1.919372839 | 1.919372833 | 1.919372829 | 1.919372828 | 1.919372827 | 1.919372827 | 1.919372827 | 1.919372827 | 1.919372827 | 1.919372827 | 1.919372827 | 1.919372827 | 1.919372827 | 1.919372827 | 1.919372827 | 1.919372827 | 1.919372827 | 1.919372827 | 1.919372827 | 1.919372827 | 1.919372827 | 1.919372827 | 1.919372827 | 1.919372827 | 1.919372827 | 1.919372827 | 1.919372827 | 1.919372827 | 1.919372827 | 1.919372827 | 1.919372827 | 1.919372827 | 1.919372827 | 1.919372827 | 1.919372827 | 1.919372827 | 1.919372827 | 1.919372827 | 1.919372827 | 1.919372827 | 1.919372827 | 1.919372827 | 1.919372827 | 1.919372827 | 1.919372827 | 1.919372827 | 1.919372827 | 1.919372827 | 1.919372827 | 1.919372827 | 1.919372827 | 1.919372827 | 1.919372827 | 1.919372827 | 1.919372827 | 1.919372827 | 1.919372827 | 1.919372827 | 1.919372827 | 1.919372827 | 1.919372827 | 1.919372827 | 1.919372827 | 1.919372827 | 1.919372827 | 1.919372827 | 1.919372827 | 1.919372827 | 1.919372827 | 1.919372827 | 1.919372827 | 1.919372827 | 1.919372827 |
The previous situation (11 points)
The present situation (13 points)
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Assessment
This issue has not been assessed yet.