[Similarity module] Add more similarity measurements
@FanwangM is already working on this.
Since Jun 25, 2024.
- Dominant language
- Jupyter Notebook
- Stars
- 42
- Forks
- 27
- PR merge metrics
- No merged PRs in 30d
Description
Implement methods listed in as similarity module https://vlachosgroup.github.io/AIMSim/implemented_metrics.html. Please add detailed documentation to show which similarity functions is corresponding to which distance functions in scikit-learn or scipy.
One question I have shall we separate the similarity and distance measurements? I get confused by some measurements, e.g. Tanimoto index of molecule fingerprints. I would see it as a distance, but they treated it as a similarity, https://vlachosgroup.github.io/AIMSim/implemented_metrics.html. If we decide to distinguish them, we may need to make them into similarity and distance modules instead of one module.
@PaulWAyers @FarnazH
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Assessment
This issue has not been assessed yet.