Interpolation with moscot
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- Dominant language
- Python
- Stars
- 216
- Forks
- 16
- Avg merge
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- Merged PRs (30d)
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Description
Hi,
Thank you for your effort in creating this valuable tool for the community and for all of the high-quality documentation!
I was interested in applying moscot for spatiotemporal interpolation (i.e. given a time-series spatial transcriptomics dataset, with 3 timepoints [A,B,C], I would like to learn a mapping from A->C and then see if this mapping interpolates B along the way). Figure1 in the paper seems to suggest that this is a downstream analysis of moscot (attached). Is there a simple way to use the .pull() or .push() methods in the SpatioTemporalProblem class to perform this downstream task? Thank you for your help!
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start with the SpatioTemporalProblem API, especially the .pull() and .push() methods, and compare their behavior with the workflow suggested by Figure 1 in the paper. Done means determining whether an A→C mapping can interpolate B and documenting a reproducible workflow or the limitation if it cannot.
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Assessment
- Tech stack
- python
- Domain
- data, machine-learning
- Issue type
- Documentation
- Difficulty
- 5/5
- Estimated time
- Over a week
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 25/100