theislab / theislab/CellFlow

warning/option for integer perturbation covariate keys

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enhancement
Dominant language
Python
Stars
159
Forks
27
PR merge metrics
No merged PRs in 30d

Description

Description of feature

now integer perturbation covariate keys in .obs are treated as concentrations and cannot be keys for .uns. we should add a warning and write that clearly in documentation or add an explicit option to have integer keys

Contributor guide

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First steps

  1. Read the whole issue, then the project's contributing guide.
  2. Comment on the issue to say you are picking it up — it saves two people doing the same work.
  3. Fork the repository and make your change on a branch.
  4. Open a pull request that references the issue number.

Research direction

No file or test is named. Start by locating the code that interprets integer perturbation covariate keys in .obs and writes or reads keys in .uns; then determine whether the expected result is a warning, documentation clarification, or explicit option, with tests covering the chosen behavior.

Written by the indexing model from the issue text.

Assessment

Tech stack
python
Domain
machine-learning
Issue type
Feature
Difficulty
4/5
Estimated time
3-5 days
Activity status
Stale
Clarity
Mostly clear
Newbie friendliness
35/100

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