theislab / theislab/CellFlow

Example notebook on how to write custom callbacks

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enhancement
Dominant language
Python
Stars
159
Forks
27
PR merge metrics
No merged PRs in 30d

Description

Description of feature

Let's write a custom callback for tracking cell type proportions during training. This is useful, thus a nice use case for demonstration

Contributor guide

Open the contributing guide

First steps

  1. Read the whole issue, then the project's contributing guide.
  2. Comment on the issue to say you are picking it up — it saves two people doing the same work.
  3. Fork the repository and make your change on a branch.
  4. Open a pull request that references the issue number.

Research direction

No files, tests, or entry points are named. Start by locating the training callback API and existing example notebooks, then create a notebook demonstrating a custom callback that tracks cell type proportions during training. Done means the notebook runs and shows the tracked proportions.

Written by the indexing model from the issue text.

Assessment

Tech stack
jupyter-notebook, python
Domain
documentation, machine-learning
Issue type
Documentation
Difficulty
3/5
Estimated time
1-2 days
Activity status
Stale
Clarity
Mostly clear
Newbie friendliness
42/100

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