tensorflow / tensorflow/tensorboard

Read record error

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Description

Diagnostics
Diagnostics output 
--- check: autoidentify
INFO: diagnose_tensorboard.py version e43767ef2b648d0d5d57c00f38ccbd38390e38da

--- check: general
INFO: sys.version_info: sys.version_info(major=3, minor=8, micro=10, releaselevel='final', serial=0)
INFO: os.name: posix
INFO: os.uname(): posix.uname_result(sysname='Linux', nodename='garlick', release='5.4.0-89-generic', version='#100-Ubuntu SMP Fri Sep 24 14:50:10 UTC 2021', machine='x86_64')
INFO: sys.getwindowsversion(): N/A

--- check: package_management
INFO: has conda-meta: False
INFO: $VIRTUAL_ENV: None

--- check: installed_packages
INFO: installed: tensorboard==2.7.0
INFO: installed: tensorflow==2.6.0
INFO: installed: tensorflow-estimator==2.6.0
INFO: installed: tensorboard-data-server==0.6.0

--- check: tensorboard_python_version
INFO: tensorboard.version.VERSION: '2.7.0'

--- check: tensorflow_python_version
INFO: tensorflow.__version__: '2.6.0'
INFO: tensorflow.__git_version__: 'v2.6.0-rc2-32-g919f693420e'

--- check: tensorboard_data_server_version
INFO: data server binary: '/usr/local/lib/python3.8/dist-packages/tensorboard_data_server/bin/server'
INFO: data server binary version: b'rustboard 0.6.0'

--- check: tensorboard_binary_path
INFO: which tensorboard: b'/usr/local/bin/tensorboard\n'

--- check: addrinfos
socket.has_ipv6 = True
socket.AF_UNSPEC = <AddressFamily.AF_UNSPEC: 0>
socket.SOCK_STREAM = <SocketKind.SOCK_STREAM: 1>
socket.AI_ADDRCONFIG = <AddressInfo.AI_ADDRCONFIG: 32>
socket.AI_PASSIVE = <AddressInfo.AI_PASSIVE: 1>
Loopback flags: <AddressInfo.AI_ADDRCONFIG: 32>
Loopback infos: [(<AddressFamily.AF_INET6: 10>, <SocketKind.SOCK_STREAM: 1>, 6, '', ('::1', 0, 0, 0)), (<AddressFamily.AF_INET: 2>, <SocketKind.SOCK_STREAM: 1>, 6, '', ('127.0.0.1', 0))]
Wildcard flags: <AddressInfo.AI_PASSIVE: 1>
Wildcard infos: [(<AddressFamily.AF_INET: 2>, <SocketKind.SOCK_STREAM: 1>, 6, '', ('0.0.0.0', 0)), (<AddressFamily.AF_INET6: 10>, <SocketKind.SOCK_STREAM: 1>, 6, '', ('::', 0, 0, 0))]

--- check: readable_fqdn
INFO: socket.getfqdn(): 'garlick'

--- check: stat_tensorboardinfo
INFO: directory: /tmp/.tensorboard-info
INFO: os.stat(...): os.stat_result(st_mode=16895, st_ino=60167861, st_dev=2114, st_nlink=2, st_uid=1251190, st_gid=665, st_size=4096, st_atime=1638393678, st_mtime=1645831882, st_ctime=1645831882)
INFO: mode: 0o40777

--- check: source_trees_without_genfiles
INFO: tensorboard_roots (1): ['/usr/local/lib/python3.8/dist-packages']; bad_roots (0): []

--- check: full_pip_freeze
INFO: pip freeze --all:
absl-py==0.12.0
aiohttp==3.7.4.post0
appdirs==1.4.4
argcomplete==1.12.3
argon2-cffi==20.1.0
arviz==0.11.2
astunparse==1.6.3
async-generator==1.10
async-timeout==3.0.1
attrs==19.3.0
Automat==0.8.0
backcall==0.2.0
bleach==3.3.0
blinker==1.4
blis==0.7.4
bokeh==2.4.1
boto==2.49.0
cachetools==4.2.1
catalogue==2.0.6
certifi==2019.11.28
cffi==1.14.5
cftime==1.4.1
chardet==3.0.4
clang==5.0
click==8.0.3
clikit==0.6.2
cloud-init==21.3
cloudpickle==1.6.0
colorama==0.4.3
command-not-found==0.3
configobj==5.0.6
constantly==15.1.0
crashtest==0.3.1
crcmod==1.7
cryptography==2.8
cupshelpers==1.0
cycler==0.10.0
cymem==2.0.5
Cython==0.29.24
dbus-python==1.2.16
decorator==5.0.7
defer==1.0.6
defusedxml==0.7.1
dill==0.3.3
distro==1.4.0
distro-info===0.23ubuntu1
dm-tree==0.1.6
edward==1.3.5
entrypoints==0.3
fail2ban==0.11.1
fasteners==0.16.3
fastprogress==1.0.0
filelock==3.3.1
flatbuffers==1.12
gast==0.4.0
gcs-oauth2-boto-plugin==2.7
gensim==4.1.2
google-apitools==0.5.32
google-auth==1.29.0
google-auth-oauthlib==0.4.4
google-pasta==0.2.0
google-reauth==0.1.1
grpcio==1.41.1
gsutil==4.64
h5py==3.1.0
httplib2==0.19.1
httpstan==4.6.1
hyperlink==19.0.0
idna==2.8
importlib-metadata==1.5.0
incremental==16.10.1
ipykernel==5.5.3
ipython==7.22.0
ipython-genutils==0.2.0
ipywidgets==7.6.3
jax==0.2.24
jaxlib==0.1.73+cuda11.cudnn82
jedi==0.18.0
Jinja2==2.10.1
joblib==1.0.1
jsonpatch==1.22
jsonpointer==2.0
jsonschema==3.2.0
jupyter==1.0.0
jupyter-client==6.1.12
jupyter-console==6.4.0
jupyter-core==4.7.1
jupyterlab-pygments==0.1.2
jupyterlab-widgets==1.0.0
keras==2.6.0
Keras-Preprocessing==1.1.2
keyring==18.0.1
kiwisolver==1.3.1
language-selector==0.1
launchpadlib==1.10.13
lazr.restfulclient==0.14.2
lazr.uri==1.0.3
ldaptor==21.2.0
macaroonbakery==1.3.1
Markdown==3.3.4
MarkupSafe==1.1.0
marshmallow==3.14.0
matplotlib==3.4.3
mistune==0.8.4
mock==2.0.0
monotonic==1.6
more-itertools==4.2.0
multidict==5.2.0
murmurhash==1.0.5
nbclient==0.5.3
nbconvert==6.0.7
nbformat==5.1.3
nest-asyncio==1.5.1
netCDF4==1.5.6
netifaces==0.10.4
nltk==3.6.5
notebook==6.3.0
numpy==1.19.5
numpyro==0.8.0
nvidia-ml-py3==7.352.0
oauth2client==4.1.3
oauthlib==3.1.0
opt-einsum==3.3.0
packaging==20.9
pandas==1.3.4
pandocfilters==1.4.3
parso==0.8.2
passlib==1.7.4
pastel==0.2.1
pathy==0.6.1
patsy==0.5.1
pbr==5.6.0
pexpect==4.6.0
pickleshare==0.7.5
Pillow==8.4.0
pip==21.3.1
plac==1.1.3
preshed==3.0.5
prometheus-client==0.10.1
prompt-toolkit==3.0.18
protobuf==3.15.8
psutil==5.8.0
ptyprocess==0.7.0
pyasn1==0.4.2
pyasn1-modules==0.2.1
pycairo==1.16.2
pycparser==2.20
pycups==1.9.73
pydantic==1.8.2
Pygments==2.8.1
PyGObject==3.36.0
PyHamcrest==1.9.0
pyinotify==0.9.6
PyJWT==1.7.1
pylev==1.4.0
pymacaroons==0.13.0
pymc3==3.11.4
PyNaCl==1.3.0
pyOpenSSL==19.0.0
pyparsing==2.4.7
pyRFC3339==1.1
pyro-api==0.1.2
pyro-ppl==1.7.0
pyrsistent==0.15.5
pyserial==3.4
pysimdjson==3.2.0
pystan==3.3.0
python-apt==2.0.0+ubuntu0.20.4.6
python-dateutil==2.8.1
python-debian===0.1.36ubuntu1
pytz==2019.3
pyu2f==0.1.5
PyYAML==5.3.1
pyzmq==22.0.3
qtconsole==5.0.3
QtPy==1.9.0
regex==2021.10.23
requests==2.22.0
requests-oauthlib==1.3.0
requests-unixsocket==0.2.0
retry-decorator==1.1.1
rsa==4.7.2
scikit-learn==1.0.1
scipy==1.7.1
screen-resolution-extra==0.0.0
seaborn==0.11.2
SecretStorage==2.3.1
semver==2.13.0
Send2Trash==1.5.0
service-identity==18.1.0
setuptools==45.2.0
simplejson==3.16.0
six==1.15.0
smart-open==5.0.0
sos==4.1
spacy==3.1.3
spacy-legacy==3.0.8
srsly==2.4.2
ssh-import-id==5.10
systemd-python==234
tensorboard==2.7.0
tensorboard-data-server==0.6.0
tensorboard-plugin-wit==1.8.0
tensorflow==2.6.0
tensorflow-estimator==2.6.0
tensorflow-probability==0.14.1
termcolor==1.1.0
terminado==0.9.4
testpath==0.4.4
Theano-PyMC==1.1.2
thinc==8.0.12
threadpoolctl==2.1.0
torch==1.10.0
tornado==6.1
tqdm==4.60.0
traitlets==5.0.5
Twisted==18.9.0
typer==0.4.0
typing-extensions==3.7.4.3
ubuntu-advantage-tools==27.2
ufw==0.36
urllib3==1.25.8
wadllib==1.3.3
wasabi==0.8.2
wcwidth==0.2.5
webargs==8.0.1
webencodings==0.5.1
Werkzeug==1.0.1
wheel==0.37.0
widgetsnbextension==3.5.1
wrapt==1.12.1
xarray==0.17.0
xkit==0.0.0
yarl==1.7.0
zipp==1.0.0
zmq==0.0.0
zope.interface==4.7.1

Issue description

Starting tensorboard, I get : [2022-02-25T23:39:20Z WARN rustboard_core::run] Read error in log/default/version_0/events.out.tfevents.1645831401.72bfeec77920.1.0: ReadRecordError(BadLengthCrc(ChecksumError { got: MaskedCrc(0x07980329), want: MaskedCrc(0x00000000) }))

Using Pytorch Lightning. Logging is done as :

      print("LOGGING!")
        self.log("total_reward", torch.tensor(self.total_reward).to(device), on_step=True, on_epoch=True, prog_bar=True, logger=True)
        self.log("reward", torch.tensor(reward).to(device), on_step=True, on_epoch=True, prog_bar=True, logger=True)
        self.log("train_loss", loss, on_step=True, on_epoch=True, prog_bar=True, logger=True)

Which has never thrown an error locally running on cpu in docker, but is now throwing an error running in the same container on gpu on a remote server.

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  4. Open a pull request that references the issue number.

Research direction

Reproduce the problem by starting TensorBoard against log/default/version-0/events.out.tfevents.1645831401.72bfeec77920.1.0, comparing the CPU Docker and remote GPU runs. Inspect the reported ReadRecordError and the PyTorch Lightning logging configuration. Done means identifying a confirmed cause for the BadLengthCrc error or documenting the conditions needed to reproduce it.

Written by the indexing model from the issue text.

Assessment

Tech stack
docker, python, pytorch, rust
Domain
machine-learning, observability
Issue type
Bug
Difficulty
4/5
Estimated time
3-5 days
Activity status
Stale
Clarity
Needs clarification
Newbie friendliness
25/100

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