tensorflow / tensorflow/tensorboard

Initializing T-SNE ... TypeError: s[e] is undefined

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Since Feb 2, 2022.

stat:awaiting tensorflower type:bug
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Description

Diagnostics
Diagnostics output 
--- check: autoidentify
INFO: diagnose_tensorboard.py version e43767ef2b648d0d5d57c00f38ccbd38390e38da

--- check: general
INFO: sys.version_info: sys.version_info(major=3, minor=8, micro=5, releaselevel='final', serial=0)
INFO: os.name: posix
INFO: os.uname(): posix.uname_result(sysname='Linux', nodename='cx1g8', release='5.15.17-200.fc35.x86_64', version='#1 SMP Thu Jan 27 16:29:05 UTC 2022', machine='x86_64')
INFO: sys.getwindowsversion(): N/A

--- check: package_management
INFO: has conda-meta: True
INFO: $VIRTUAL_ENV: None

--- check: installed_packages
INFO: installed: tensorboard==2.8.0
INFO: installed: tensorflow==2.7.0
INFO: installed: tensorflow-estimator==2.7.0
INFO: installed: tensorboard-data-server==0.6.1

--- check: tensorboard_python_version
INFO: tensorboard.version.VERSION: '2.8.0'

--- check: tensorflow_python_version
2022-02-01 19:49:55.601843: W tensorflow/stream_executor/platform/default/dso_loader.cc:64] Could not load dynamic library 'libcudart.so.11.0'; dlerror: libcudart.so.11.0: cannot open shared object file: No such file or directory
2022-02-01 19:49:55.601869: I tensorflow/stream_executor/cuda/cudart_stub.cc:29] Ignore above cudart dlerror if you do not have a GPU set up on your machine.
INFO: tensorflow.__version__: '2.7.0'
INFO: tensorflow.__git_version__: 'v2.7.0-rc1-69-gc256c071bb2'

--- check: tensorboard_data_server_version
INFO: data server binary: '/home/cwilmot/.conda/envs/python3.8_env/lib/python3.8/site-packages/tensorboard_data_server/bin/server'
INFO: data server binary version: b'rustboard 0.6.1'

--- check: tensorboard_binary_path
INFO: which tensorboard: b'/home/cwilmot/.conda/envs/python3.8_env/bin/tensorboard\n'

--- check: addrinfos
socket.has_ipv6 = True
socket.AF_UNSPEC = <AddressFamily.AF_UNSPEC: 0>
socket.SOCK_STREAM = <SocketKind.SOCK_STREAM: 1>
socket.AI_ADDRCONFIG = <AddressInfo.AI_ADDRCONFIG: 32>
socket.AI_PASSIVE = <AddressInfo.AI_PASSIVE: 1>
Loopback flags: <AddressInfo.AI_ADDRCONFIG: 32>
Loopback infos: [(<AddressFamily.AF_INET6: 10>, <SocketKind.SOCK_STREAM: 1>, 6, '', ('::1', 0, 0, 0)), (<AddressFamily.AF_INET: 2>, <SocketKind.SOCK_STREAM: 1>, 6, '', ('127.0.0.1', 0))]
Wildcard flags: <AddressInfo.AI_PASSIVE: 1>
Wildcard infos: [(<AddressFamily.AF_INET: 2>, <SocketKind.SOCK_STREAM: 1>, 6, '', ('0.0.0.0', 0)), (<AddressFamily.AF_INET6: 10>, <SocketKind.SOCK_STREAM: 1>, 6, '', ('::', 0, 0, 0))]

--- check: readable_fqdn
INFO: socket.getfqdn(): 'cx1g8'

--- check: stat_tensorboardinfo
INFO: directory: /tmp/.tensorboard-info
INFO: os.stat(...): os.stat_result(st_mode=16895, st_ino=238, st_dev=37, st_nlink=2, st_uid=1000, st_gid=1000, st_size=60, st_atime=1643719946, st_mtime=1643741248, st_ctime=1643741248)
INFO: mode: 0o40777

--- check: source_trees_without_genfiles
INFO: tensorboard_roots (1): ['/home/cwilmot/.conda/envs/python3.8_env/lib/python3.8/site-packages']; bad_roots (0): []

--- check: full_pip_freeze
INFO: pip freeze --all:
absl-py @ file:///tmp/build/80754af9/absl-py_1623867230185/work
aiohttp @ file:///tmp/build/80754af9/aiohttp_1614360992924/work
argon2-cffi==21.1.0
arxiv==1.4.2
astor==0.8.1
astunparse==1.6.3
async-timeout==3.0.1
attrs @ file:///tmp/build/80754af9/attrs_1620827162558/work
backcall==0.2.0
bcrypt @ file:///tmp/build/80754af9/bcrypt_1597936221426/work
bleach==4.1.0
blinker==1.4
box2d-py==2.3.8
brotlipy==0.7.0
cachetools @ file:///tmp/build/80754af9/cachetools_1619597386817/work
certifi==2021.5.30
cffi==1.14.2
chardet @ file:///tmp/build/80754af9/chardet_1605303185383/work
charset-normalizer @ file:///tmp/build/80754af9/charset-normalizer_1630003229654/work
chex==0.0.8
click @ file:///tmp/build/80754af9/click_1621604852318/work
cloudpickle @ file:///Users/ktietz/demo/mc3/conda-bld/cloudpickle_1629142150447/work
coverage @ file:///tmp/build/80754af9/coverage_1614613670853/work
crc32c==2.2.post0
cryptography @ file:///tmp/build/80754af9/cryptography_1616769286105/work
cycler==0.10.0
Cython @ file:///tmp/build/80754af9/cython_1626256955500/work
cytoolz==0.11.0
dask @ file:///tmp/build/80754af9/dask-core_1630523592567/work
debugpy==1.4.3
decorator==4.4.2
defusedxml==0.7.1
dill @ file:///tmp/build/80754af9/dill_1623919422540/work
distrax==0.0.2
dm-haiku==0.0.5
dm-tree==0.1.6
entrypoints==0.3
feedparser==6.0.8
flatbuffers==2.0
flax==0.3.5
fsspec @ file:///tmp/build/80754af9/fsspec_1626383727127/work
future==0.18.2
gast==0.3.3
google-auth @ file:///tmp/build/80754af9/google-auth_1626320605116/work
google-auth-oauthlib @ file:///tmp/build/80754af9/google-auth-oauthlib_1617120569401/work
google-pasta @ file:///Users/ktietz/demo/mc3/conda-bld/google-pasta_1630577991354/work
googleapis-common-protos @ file:///tmp/build/80754af9/googleapis-common-protos-feedstock_1617957649450/work
grpcio @ file:///tmp/build/80754af9/grpcio_1614884175859/work
h5py @ file:///tmp/build/80754af9/h5py_1593454122442/work
idna @ file:///tmp/build/80754af9/idna_1622654382723/work
imageio @ file:///tmp/build/80754af9/imageio_1617700267927/work
importlib-metadata @ file:///tmp/build/80754af9/importlib-metadata_1617874469820/work
ipykernel==6.4.1
ipython==7.27.0
ipython-genutils==0.2.0
ipywidgets==7.6.5
jax==0.2.27
jaxlib==0.1.75
jedi==0.18.0
Jinja2==3.0.1
jmp==0.0.2
jsonschema==3.2.0
jupyter==1.0.0
jupyter-client==7.0.3
jupyter-console==6.4.0
jupyter-core==4.8.1
jupyterlab-pygments==0.1.2
jupyterlab-widgets==1.0.2
keras==2.7.0
Keras-Preprocessing @ file:///tmp/build/80754af9/keras-preprocessing_1612283640596/work
kiwisolver @ file:///tmp/build/80754af9/kiwisolver_1612282420641/work
libclang==13.0.0
locket==0.2.1
Markdown @ file:///tmp/build/80754af9/markdown_1614363528767/work
MarkupSafe==2.0.1
matplotlib @ file:///tmp/build/80754af9/matplotlib-base_1603378225747/work
matplotlib-inline==0.1.3
mistune==0.8.4
mkchromecast==0.3.9
mkl-fft==1.3.0
mkl-random @ file:///tmp/build/80754af9/mkl_random_1626186064646/work
mkl-service==2.4.0
mpld3==0.5.5
mpmath==1.1.0
msgpack==1.0.2
mujoco-py==2.0.2.10
multidict @ file:///tmp/build/80754af9/multidict_1607367757617/work
nbclient==0.5.4
nbconvert==6.1.0
nbformat==5.1.3
nest-asyncio==1.5.1
networkx @ file:///tmp/build/80754af9/networkx_1627459939258/work
notebook==6.4.4
numpy @ file:///tmp/build/80754af9/numpy_and_numpy_base_1626271506491/work
oauthlib @ file:///tmp/build/80754af9/oauthlib_1623060228408/work
olefile @ file:///Users/ktietz/demo/mc3/conda-bld/olefile_1629805411829/work
opencv-python==4.2.0.34
opt-einsum @ file:///tmp/build/80754af9/opt_einsum_1621500238896/work
optax==0.0.9
packaging @ file:///tmp/build/80754af9/packaging_1625611678980/work
pandas==1.2.0
pandocfilters==1.5.0
paramiko @ file:///tmp/build/80754af9/paramiko_1598886428689/work
parso==0.8.2
partd @ file:///tmp/build/80754af9/partd_1618000087440/work
pexpect==4.8.0
pickleshare==0.7.5
Pillow @ file:///tmp/build/80754af9/pillow_1625655817137/work
pip==22.0.2
prometheus-client==0.11.0
promise @ file:///tmp/build/80754af9/promise_1614011636525/work
prompt-toolkit==3.0.20
protobuf==3.17.2
psutil @ file:///tmp/build/80754af9/psutil_1612298023621/work
ptyprocess==0.7.0
pyasn1 @ file:///Users/ktietz/demo/mc3/conda-bld/pyasn1_1629708007385/work
pyasn1-modules==0.2.8
pycparser @ file:///tmp/build/80754af9/pycparser_1594388511720/work
pydub==0.24.1
Pygments==2.10.0
PyJWT @ file:///tmp/build/80754af9/pyjwt_1619651636675/work
PyNaCl @ file:///tmp/build/80754af9/pynacl_1595009131182/work
pyOpenSSL @ file:///tmp/build/80754af9/pyopenssl_1608057966937/work
pyparsing @ file:///home/linux1/recipes/ci/pyparsing_1610983426697/work
PyRep @ file:///home/cwilmot/Software/PyRep
pyrsistent==0.18.0
PySocks @ file:///tmp/build/80754af9/pysocks_1605305779399/work
python-dateutil @ file:///tmp/build/80754af9/python-dateutil_1626374649649/work
pytz==2020.5
PyWavelets @ file:///tmp/build/80754af9/pywavelets_1601658317819/work
PyYAML==5.4.1
pyzmq==22.3.0
qtconsole==5.1.1
QtPy==1.11.1
requests @ file:///tmp/build/80754af9/requests_1629994808627/work
requests-oauthlib==1.3.0
rlax==0.0.4
rsa @ file:///tmp/build/80754af9/rsa_1614366226499/work
scikit-image==0.17.2
scipy @ file:///tmp/build/80754af9/scipy_1630606796110/work
selenium==3.141.0
Send2Trash==1.8.0
setuptools==52.0.0.post20210125
sgmllib3k==1.0.0
sip==4.19.13
six @ file:///tmp/build/80754af9/six_1623709665295/work
sounddevice==0.4.2
sympy==1.6.2
tabulate==0.8.9
tensorboard==2.8.0
tensorboard-data-server==0.6.1
tensorboard-plugin-wit==1.6.0
tensorboardX==2.4.1
tensorflow==2.7.0
tensorflow-datasets @ file:///tmp/build/80754af9/tensorflow-datasets_1615394951098/work
tensorflow-estimator==2.7.0
tensorflow-io-gcs-filesystem==0.23.1
tensorflow-metadata==0.14.0
tensorflow-probability==0.15.0
termcolor==1.1.0
terminado==0.12.1
testpath==0.5.0
tifffile==2020.10.1
tikzplotlib==0.9.6
toolz @ file:///home/linux1/recipes/ci/toolz_1610987900194/work
tornado @ file:///tmp/build/80754af9/tornado_1606942300299/work
tqdm @ file:///tmp/build/80754af9/tqdm_1629302309755/work
traitlets==5.1.0
typing-extensions @ file:///tmp/build/80754af9/typing_extensions_1624965014186/work
urllib3 @ file:///tmp/build/80754af9/urllib3_1625084269274/work
wcwidth==0.2.5
webencodings==0.5.1
Werkzeug @ file:///home/ktietz/src/ci/werkzeug_1611932622770/work
wheel==0.37.0
widgetsnbextension==3.5.1
wrapt==1.12.1
xlrd==1.2.0
yarl @ file:///tmp/build/80754af9/yarl_1606939922162/work
zipp @ file:///tmp/build/80754af9/zipp_1625570634446/work

For browser-related issues, please additionally specify:

  • Browser type and version Firefox and Chrome:
Issue description

In the PROJECTOR tab, starting a T-SNE visualization hangs while displaying Initializing T-SNE...
In the console, I see the following error:

Uncaught (in promise) TypeError: s[e] is undefined
    nearest2P http://localhost:6006/data/plugin/projector/projector_binary.js:6180
    initDataDist http://localhost:6006/data/plugin/projector/projector_binary.js:6180
    projectTSNE http://localhost:6006/data/plugin/projector/projector_binary.js:13226
    runAsyncTask http://localhost:6006/data/plugin/projector/projector_binary.js:13226
    setTimeout handler*runAsyncTask/< http://localhost:6006/data/plugin/projector/projector_binary.js:13226
    runAsyncTask http://localhost:6006/data/plugin/projector/projector_binary.js:13226
    projectTSNE http://localhost:6006/data/plugin/projector/projector_binary.js:13226
    promise callback*projectTSNE http://localhost:6006/data/plugin/projector/projector_binary.js:13226
    runTSNE http://localhost:6006/data/plugin/projector/projector_binary.js:15084
    showTSNE http://localhost:6006/data/plugin/projector/projector_binary.js:15084
    beginProjection http://localhost:6006/data/plugin/projector/projector_binary.js:15084
    showTab http://localhost:6006/data/plugin/projector/projector_binary.js:15084
    setupUIControls http://localhost:6006/data/plugin/projector/projector_binary.js:15084
    setupUIControls http://localhost:6006/data/plugin/projector/projector_binary.js:15084
    initialize http://localhost:6006/data/plugin/projector/projector_binary.js:15084
    ready http://localhost:6006/data/plugin/projector/projector_binary.js:15463
    o http://localhost:6006/data/plugin/projector/projector_binary.js:57
    promise callback*l http://localhost:6006/data/plugin/projector/projector_binary.js:57
    1 http://localhost:6006/data/plugin/projector/projector_binary.js:57
    __awaiter$1 http://localhost:6006/data/plugin/projector/projector_binary.js:57
    ready http://localhost:6006/data/plugin/projector/projector_binary.js:15463
    _enableProperties http://localhost:6006/data/plugin/projector/projector_binary.js:121
    _enableProperties http://localhost:6006/data/plugin/projector/projector_binary.js:387
    __enableOrFlushClients http://localhost:6006/data/plugin/projector/projector_binary.js:141
    _readyClients http://localhost:6006/data/plugin/projector/projector_binary.js:141
    _flushClients http://localhost:6006/data/plugin/projector/projector_binary.js:141
    _propertiesChanged http://localhost:6006/data/plugin/projector/projector_binary.js:141
    _flushProperties http://localhost:6006/data/plugin/projector/projector_binary.js:121
    ready http://localhost:6006/data/plugin/projector/projector_binary.js:141
    _enableProperties http://localhost:6006/data/plugin/projector/projector_binary.js:121
    TemplateInstanceBase http://localhost:6006/data/plugin/projector/projector_binary.js:425
    <anonymous> http://localhost:6006/data/plugin/projector/projector_binary.js:415
    i http://localhost:6006/data/plugin/projector/projector_binary.js:425
    o http://localhost:6006/data/plugin/projector/projector_binary.js:425
    __createAndInsertInstance http://localhost:6006/data/plugin/projector/projector_binary.js:472
    __ensureInstance http://localhost:6006/data/plugin/projector/projector_binary.js:472
    __render http://localhost:6006/data/plugin/projector/projector_binary.js:472
    __renderDebouncer http://localhost:6006/data/plugin/projector/projector_binary.js:472
    _timer http://localhost:6006/data/plugin/projector/projector_binary.js:283
    microtaskFlush http://localhost:6006/data/plugin/projector/projector_binary.js:121
    MutationCallback* http://localhost:6006/data/plugin/projector/projector_binary.js:121
    <anonymous> http://localhost:6006/data/plugin/projector/projector_binary.js:15597

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