tensorflow / tensorflow/probability

AutoBNN

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Description

Hello, i am trying to use the codes of AutoBNN shared here to mdel my data but it gives very big values of MAE, RMSE and Rsquared, what adjustment can i make to reduce the eror ?
here is the code

-- coding: utf-8 --

"""
Created on Sun Oct 27 15:41:32 2024

@author: iO
"""

import jax
import jax.numpy as jnp
import numpy as np
import pandas as pd
import matplotlib.pyplot as plt
from sklearn.preprocessing import StandardScaler
from autobnn import estimators
from autobnn import training_util

Seed setup

seed = jax.random.PRNGKey(0)

Load data

data = pd.read_csv("path_to_data/Bukomansimbi.txt", delim_whitespace=True)
data.columns = data.columns.str.lower()

Date and rainfall extraction

data['date'] = pd.to_datetime(data[['year', 'month', 'day']])
rainfall_by_day = data['value'].values

Train/test split configuration

num_forecast_steps = 365
train_data = rainfall_by_day[:-num_forecast_steps]
test_data = rainfall_by_day[-num_forecast_steps:]
dates_train = data['date'].values[:-num_forecast_steps]
dates_test = data['date'].values[-num_forecast_steps:]

Normalize and scale data

scaler = StandardScaler()
train_scaled = scaler.fit_transform(train_data.reshape(-1, 1)).flatten()
test_scaled = scaler.transform(test_data.reshape(-1, 1)).flatten()

Add time feature for seasonality

month_sin = np.sin(2 * np.pi * data['month'].values / 12)
month_cos = np.cos(2 * np.pi * data['month'].values / 12)
x_train = np.stack([month_sin[:-num_forecast_steps], month_cos[:-num_forecast_steps]], axis=1)
x_test = np.stack([month_sin[-num_forecast_steps:], month_cos[-num_forecast_steps:]], axis=1)

Initialize AutoBNN

est = estimators.AutoBnnMapEstimator(
'sum_of_products',
likelihood_model='normal_likelihood_logistic_noise',
seed=seed,
periods=(1.0,), # one year period as float since date normalization handles scaling
num_particles=32
)

Fit the model

est.fit(x_train, train_scaled[:, None])

Prediction

preds = est.predict(x_test)[:, 0] # Squeeze predictions
quantiles = est.predict_quantiles(x_test, q=[2.5, 50., 90., 97.5])
lo, mid, p90, hi = quantiles[:, 0], quantiles[:, 1], quantiles[:, 2], quantiles[:, 3]

Plotting the results

plt.figure(figsize=(16, 10))
plt.plot(dates_train, train_scaled, label='Training Data')
plt.plot(dates_test, test_scaled, label='Actual')
plt.plot(dates_test, mid, label='Predictions', color='r')
plt.fill_between(dates_test, lo, hi, color='r', alpha=0.3, label='Confidence Interval')
plt.title('Rainfall Prediction in Bukomansimbi')
plt.xlabel('Date')
plt.ylabel('Standardized Rainfall')
plt.legend()
plt.show()

Performance Metrics

mae = np.mean(np.abs(preds - test_scaled))
rmse = np.sqrt(np.mean((preds - test_scaled) ** 2))
r_squared = 1 - np.sum((preds - test_scaled) ** 2) / np.sum((test_scaled - np.mean(test_scaled)) ** 2)

print(f"Mean Absolute Error (MAE): {mae:.2f}")
print(f"Root Mean Square Error (RMSE): {rmse:.2f}")
print(f"R-squared: {r_squared:.2f}")

Contributor guide

Open the contributing guide

First steps

  1. Read the whole issue, then the project's contributing guide.
  2. Comment on the issue to say you are picking it up — it saves two people doing the same work.
  3. Fork the repository and make your change on a branch.
  4. Open a pull request that references the issue number.

Research direction

Reproduce the supplied script and inspect the AutoBnnMapEstimator entry points used by fit, predict, and predict_quantiles, including the configured likelihood, period, features, and scaled targets. Compare the reported metrics and prediction plots with the training/test split; done means identifying a reproducible cause for the errors or confirming that the behavior is expected for this setup.

Written by the indexing model from the issue text.

Assessment

Tech stack
numpy, pandas, python, scikit-learn
Domain
data, machine-learning
Issue type
Bug
Difficulty
4/5
Estimated time
3-5 days
Activity status
Stale
Clarity
Needs clarification
Newbie friendliness
20/100

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