tensorflow / tensorflow/probability
Model stuck when calling .fit(x, y) using negative binomial in DistributionLambda Layer
Nobody has claimed this yet.
- Dominant language
- Jupyter Notebook
- Stars
- 4.4k
- Forks
- 1.1k
- PR merge metrics
- No merged PRs in 30d
Description
Hi all,
I have a simple BNN that I just tried to change to have a negative binomial distribution as output:
def get_model(input_shape, loss, optimizer, metrics, kl_weight, output_shape):
inputs = Input(shape=(input_shape))
x = BatchNormalization()(inputs)
x = tfpl.DenseVariational(units=128, activation='tanh', make_posterior_fn=get_posterior, make_prior_fn=get_prior, kl_weight=kl_weight)(x)
count = Dense(1)(x)
logits = Dense(output_shape, activation = 'sigmoid')(x)
neg_binom = tfp.layers.DistributionLambda(
lambda t: tfd.NegativeBinomial(total_count=t[..., 0:1], probs = t[..., 1:]))
cat = Concatenate(axis=-1)([count, logits])
outputs = neg_binom(cat)
model = Model(inputs, outputs)
model.compile(optimizer=optimizer, loss=loss, metrics=metrics)
return model
I do not get an error, it compiles and when I call model.fit(x,y) I just get:
Epoch 1/500
and it's stuck here forever (about 20 minutes I waited for the longest).
When I use a Poisson Layer, which I did before it starts fitting instantly, an epoch runs about 1s.
What could be the cause of this? Is there something wrong with my code above?
I was hoping to call param_size but distribution lambda seems not to support this (just in case I am missing something).
If I use a single Dense Layer without concatenate and just linear activation I get the same behavior.
Many thanks for your insights and tips on things to try and debug this behavior.
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start by reproducing the provided model and calling model.fit(x, y), then compare its behavior with the Poisson Layer case. Inspect the DistributionLambda and NegativeBinomial configuration shown in the issue; done means identifying why training remains at Epoch 1/500 and documenting a reproducible cause or correction.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- python, tensorflow
- Domain
- machine-learning
- Issue type
- Bug
- Difficulty
- 4/5
- Estimated time
- 3-5 days
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 25/100