stan-dev / stan-dev/rstanarm

Installation failure for `feature/survival`

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Dominant language
R
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Description

Summary:

I can't install the feature/survival branch on my Windows laptop.

Description:
C:/Users/XXX/Documents/R-4.2.3/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
make: *** [C:/Users/XXX/DOCUME~1/R-42~1.3/etc/x64/Makeconf:258: stan_files/bernoulli.o] Error 1
rm stan_files/polr.cc stan_files/mvmer.cc stan_files/count.cc stan_files/lm.cc stan_files/jm.cc stan_files/surv.cc stan_files/bernoulli.cc stan_files/binomial.cc stan_files/continuous.cc
ERROR: compilation failed for package 'rstanarm'
* removing 'C:/Users/yangz34/Documents/R-4.2.3/library/rstanarm'
Warning messages:
1: In utils::untar(tarfile, ...) :
  ‘tar.exe -xf "C:\Users\yangz34\AppData\Local\Temp\Rtmpik6Umn\file870c79f36023.tar.gz" -C "C:/Users/yangz34/AppData/Local/Temp/Rtmpik6Umn/remotes870c71913799"’ returned error code 1
2: In i.p(...) :
  installation of package ‘C:/Users/yangz34/AppData/Local/Temp/Rtmpik6Umn/file870c2d986e5c/rstanarm_2.21.3.tar.gz’ had non-zero exit status
Reproducible Steps:

If applicable, the steps required to reproduce the issue. If you have a reproducible example, please include it.

Sys.setenv(MAKEFLAGS = "-j2")
Sys.setenv("R_REMOTES_NO_ERRORS_FROM_WARNINGS" = "true")
devtools::install_github("stan-dev/rstanarm", ref = "feature/survival", build_vignettes = FALSE)
RStanARM Version:
stan-dev/rstanarm
R Version:
> getRversion()
[1] ‘4.2.3’
Operating System:

Windows 10

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First steps

  1. Read the whole issue, then the project's contributing guide.
  2. Comment on the issue to say you are picking it up — it saves two people doing the same work.
  3. Fork the repository and make your change on a branch.
  4. Open a pull request that references the issue number.

Research direction

Start by reproducing the Windows 10 installation with R 4.2.3 using the listed devtools::install_github command for the feature/survival branch and MAKEFLAGS=-j2. Inspect the compiler output around stan_files/bernoulli.o and determine what prevents rstanarm from installing; done means the branch installs successfully.

Written by the indexing model from the issue text.

Assessment

Tech stack
r
Domain
build-system, operating-systems
Issue type
Bug
Difficulty
4/5
Estimated time
3-5 days
Activity status
Stale
Clarity
Needs clarification
Newbie friendliness
25/100

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