Installation failure on linux

Summary:

Errors when installing "rstanarm", I think there might be some calls to deprecated c++ class templates (auto_ptr).

Description:

See bottom for console output when I try to install. It keeps going forever so I just terminated R.

Reproducible Steps:

I am using GCC version 11.1.0 and gcc-fortran

RStanARM Version:

N/A

R Version:

4.1.2

Operating System:

Arch Linux

Console output on install attempt

install.packages("rstanarm", repos='https://cran.us.r-project.org')
Installing package into ‘/home/austin/R/x86_64-pc-linux-gnu-library/4.1’
(as ‘lib’ is unspecified)
trying URL 'https://cran.us.r-project.org/src/contrib/rstanarm_2.21.1.tar.gz'
Content type 'application/octet-stream' length 3548723 bytes (3.4 MB)

downloaded 3.4 MB

• installing source package ‘rstanarm’ ...
  ** package ‘rstanarm’ successfully unpacked and MD5 sums checked
  ** using staged installation
  ** libs
  "/usr/lib64/R/bin/Rscript" -e "source(file.path('..', 'tools', 'make_cc.R')); make_cc(commandArgs(TRUE))" stan_files/bernoulli.stan
  Wrote C++ file "stan_files/bernoulli.cc"

g++ -std=gnu++14 -I"/usr/include/R/" -DNDEBUG -I"../inst/include" -I"/home/austin/R/x86_64-pc-linux-gnu-library/4.1/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -I'/home/austin/R/x86_64-pc-linux-gnu-library/4.1/StanHeaders/include' -I'/home/austin/R/x86_64-pc-linux-gnu-library/4.1/rstan/include' -I'/home/austin/R/x86_64-pc-linux-gnu-library/4.1/BH/include' -I'/home/austin/R/x86_64-pc-linux-gnu-library/4.1/Rcpp/include' -I'/home/austin/R/x86_64-pc-linux-gnu-library/4.1/RcppEigen/include' -I'/home/austin/R/x86_64-pc-linux-gnu-library/4.1/RcppParallel/include' -D_FORTIFY_SOURCE=2 "/usr/lib64/R/bin/Rscript" -e "RcppParallel::CxxFlags()" "/usr/lib64/R/bin/Rscript" -e "StanHeaders:::CxxFlags()" -fpic -march=x86-64 -mtune=generic -O2 -pipe -fno-plt -c stan_files/bernoulli.cc -o stan_files/bernoulli.o
In file included from /home/austin/R/x86_64-pc-linux-gnu-library/4.1/RcppEigen/include/Eigen/Core:397,
from /home/austin/R/x86_64-pc-linux-gnu-library/4.1/RcppEigen/include/Eigen/Dense:1,
from /home/austin/R/x86_64-pc-linux-gnu-library/4.1/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13,
from /home/austin/R/x86_64-pc-linux-gnu-library/4.1/rstan/include/rstan/rstaninc.hpp:3,
from stan_files/bernoulli.hpp:18,
from stan_files/bernoulli.cc:3:
/home/austin/R/x86_64-pc-linux-gnu-library/4.1/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:60:39: warning: ignoring attributes on template argument ‘__m128’ [-Wignored-attributes]
60 | template<> struct is_arithmetic<__m128> { enum { value = true }; };
| ^
/home/austin/R/x86_64-pc-linux-gnu-library/4.1/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:61:40: warning: ignoring attributes on template argument ‘__m128i’ [-Wignored-attributes]
61 | template<> struct is_arithmetic<__m128i> { enum { value = true }; };
| ^
/home/austin/R/x86_64-pc-linux-gnu-library/4.1/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:62:40: warning: ignoring attributes on template argument ‘__m128d’ [-Wignored-attributes]
62 | template<> struct is_arithmetic<__m128d> { enum { value = true }; };
| ^
/home/austin/R/x86_64-pc-linux-gnu-library/4.1/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:161:43: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes]
161 | template<> struct unpacket_traits { typedef float type; enum {size=4, alignment=Aligned16}; typedef Packet4f half; };
| ^
/home/austin/R/x86_64-pc-linux-gnu-library/4.1/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:162:43: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes]
162 | template<> struct unpacket_traits { typedef double type; enum {size=2, alignment=Aligned16}; typedef Packet2d half; };
| ^
/home/austin/R/x86_64-pc-linux-gnu-library/4.1/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:163:43: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4i’ {aka ‘__m128i’} [-Wignored-attributes]
163 | template<> struct unpacket_traits { typedef int type; enum {size=4, alignment=Aligned16}; typedef Packet4i half; };
| ^
/home/austin/R/x86_64-pc-linux-gnu-library/4.1/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:718:35: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes]
718 | struct palign_impl<Offset,Packet4f>
| ^
/home/austin/R/x86_64-pc-linux-gnu-library/4.1/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:741:35: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4i’ {aka ‘__m128i’} [-Wignored-attributes]
741 | struct palign_impl<Offset,Packet4i>
| ^
/home/austin/R/x86_64-pc-linux-gnu-library/4.1/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:764:35: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes]
764 | struct palign_impl<Offset,Packet2d>
| ^
/home/austin/R/x86_64-pc-linux-gnu-library/4.1/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:778:34: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes]
778 | ptranspose(PacketBlock<Packet4f,4>& kernel) {
| ^
/home/austin/R/x86_64-pc-linux-gnu-library/4.1/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:783:34: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes]
783 | ptranspose(PacketBlock<Packet2d,2>& kernel) {
| ^
/home/austin/R/x86_64-pc-linux-gnu-library/4.1/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:790:34: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4i’ {aka ‘__m128i’} [-Wignored-attributes]
790 | ptranspose(PacketBlock<Packet4i,4>& kernel) {
| ^
In file included from /home/austin/R/x86_64-pc-linux-gnu-library/4.1/RcppEigen/include/Eigen/Core:377,
from /home/austin/R/x86_64-pc-linux-gnu-library/4.1/RcppEigen/include/Eigen/Dense:1,
from /home/austin/R/x86_64-pc-linux-gnu-library/4.1/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13,
from /home/austin/R/x86_64-pc-linux-gnu-library/4.1/rstan/include/rstan/rstaninc.hpp:3,
from stan_files/bernoulli.hpp:18,
from stan_files/bernoulli.cc:3:
/home/austin/R/x86_64-pc-linux-gnu-library/4.1/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:15:70: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes]
15 | template<> struct conj_helper<PACKET_REAL, PACKET_CPLX, false,false> {
| ^
/home/austin/R/x86_64-pc-linux-gnu-library/4.1/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:232:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’
232 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/austin/R/x86_64-pc-linux-gnu-library/4.1/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:22:70: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes]
22 | template<> struct conj_helper<PACKET_CPLX, PACKET_REAL, false,false> {
| ^
/home/austin/R/x86_64-pc-linux-gnu-library/4.1/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:232:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’
232 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/austin/R/x86_64-pc-linux-gnu-library/4.1/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:15:70: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes]
15 | template<> struct conj_helper<PACKET_REAL, PACKET_CPLX, false,false> {
| ^
/home/austin/R/x86_64-pc-linux-gnu-library/4.1/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:417:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’
417 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/austin/R/x86_64-pc-linux-gnu-library/4.1/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:22:70: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes]
22 | template<> struct conj_helper<PACKET_CPLX, PACKET_REAL, false,false> {
| ^
/home/austin/R/x86_64-pc-linux-gnu-library/4.1/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:417:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’
417 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /home/austin/R/x86_64-pc-linux-gnu-library/4.1/RcppEigen/include/Eigen/Core:370,
from /home/austin/R/x86_64-pc-linux-gnu-library/4.1/RcppEigen/include/Eigen/Dense:1,
from /home/austin/R/x86_64-pc-linux-gnu-library/4.1/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13,
from /home/austin/R/x86_64-pc-linux-gnu-library/4.1/rstan/include/rstan/rstaninc.hpp:3,
from stan_files/bernoulli.hpp:18,
from stan_files/bernoulli.cc:3:
/home/austin/R/x86_64-pc-linux-gnu-library/4.1/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet<float, 4>’:
/home/austin/R/x86_64-pc-linux-gnu-library/4.1/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits<Eigen::Matrix<float, 4, 1> >’
/home/austin/R/x86_64-pc-linux-gnu-library/4.1/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:243:49: required from ‘struct Eigen::internal::traits<Eigen::Quaternion >’
/home/austin/R/x86_64-pc-linux-gnu-library/4.1/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:24:46: required from here
/home/austin/R/x86_64-pc-linux-gnu-library/4.1/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes]
187 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same<PacketType,typename unpacket_traits::half>::value>
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/austin/R/x86_64-pc-linux-gnu-library/4.1/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes]
187 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same<PacketType,typename unpacket_traits::half>::value>
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/austin/R/x86_64-pc-linux-gnu-library/4.1/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes]
/home/austin/R/x86_64-pc-linux-gnu-library/4.1/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(4) float>::half’ {aka ‘__m128’} [-Wignored-attributes]
/home/austin/R/x86_64-pc-linux-gnu-library/4.1/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:205:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes]
205 | typedef typename find_best_packet_helper<Size,typename packet_traits::type>::type type;
| ^~~~
In file included from /home/austin/R/x86_64-pc-linux-gnu-library/4.1/RcppEigen/include/Eigen/Core:439,
from /home/austin/R/x86_64-pc-linux-gnu-library/4.1/RcppEigen/include/Eigen/Dense:1,
from /home/austin/R/x86_64-pc-linux-gnu-library/4.1/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13,
from /home/austin/R/x86_64-pc-linux-gnu-library/4.1/rstan/include/rstan/rstaninc.hpp:3,
from stan_files/bernoulli.hpp:18,
from stan_files/bernoulli.cc:3:
/home/austin/R/x86_64-pc-linux-gnu-library/4.1/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<float, 4, 1>, 0>’:
/home/austin/R/x86_64-pc-linux-gnu-library/4.1/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<float, 4, 1>, 1>’
/home/austin/R/x86_64-pc-linux-gnu-library/4.1/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<float, 4, 1>, 3>’
/home/austin/R/x86_64-pc-linux-gnu-library/4.1/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase<Eigen::Matrix<float, 4, 1> >’
/home/austin/R/x86_64-pc-linux-gnu-library/4.1/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase<Eigen::Matrix<float, 4, 1> >’
/home/austin/R/x86_64-pc-linux-gnu-library/4.1/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase<Eigen::Matrix<float, 4, 1> >’
/home/austin/R/x86_64-pc-linux-gnu-library/4.1/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix<float, 4, 1>’
/home/austin/R/x86_64-pc-linux-gnu-library/4.1/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50: required from ‘class Eigen::QuaternionBase<Eigen::Quaternion >’
/home/austin/R/x86_64-pc-linux-gnu-library/4.1/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:250:7: required from ‘class Eigen::Quaternion’
/home/austin/R/x86_64-pc-linux-gnu-library/4.1/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:27:3: required from here
/home/austin/R/x86_64-pc-linux-gnu-library/4.1/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes]
55 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
In file included from /home/austin/R/x86_64-pc-linux-gnu-library/4.1/RcppEigen/include/Eigen/Core:370,
from /home/austin/R/x86_64-pc-linux-gnu-library/4.1/RcppEigen/include/Eigen/Dense:1,
from /home/austin/R/x86_64-pc-linux-gnu-library/4.1/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13,
from /home/austin/R/x86_64-pc-linux-gnu-library/4.1/rstan/include/rstan/rstaninc.hpp:3,
from stan_files/bernoulli.hpp:18,
from stan_files/bernoulli.cc:3:
/home/austin/R/x86_64-pc-linux-gnu-library/4.1/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet<double, 4>’:
/home/austin/R/x86_64-pc-linux-gnu-library/4.1/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits<Eigen::Matrix<double, 4, 1> >’
/home/austin/R/x86_64-pc-linux-gnu-library/4.1/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:243:49: required from ‘struct Eigen::internal::traits<Eigen::Quaternion >’
/home/austin/R/x86_64-pc-linux-gnu-library/4.1/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:88:47: required from here
/home/austin/R/x86_64-pc-linux-gnu-library/4.1/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes]
187 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same<PacketType,typename unpacket_traits::half>::value>
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/austin/R/x86_64-pc-linux-gnu-library/4.1/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes]
187 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same<PacketType,typename unpacket_traits::half>::value>
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/austin/R/x86_64-pc-linux-gnu-library/4.1/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/austin/R/x86_64-pc-linux-gnu-library/4.1/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
/home/austin/R/x86_64-pc-linux-gnu-library/4.1/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:205:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes]
205 | typedef typename find_best_packet_helper<Size,typename packet_traits::type>::type type;
| ^~~~
In file included from /home/austin/R/x86_64-pc-linux-gnu-library/4.1/RcppEigen/include/Eigen/Core:439,
from /home/austin/R/x86_64-pc-linux-gnu-library/4.1/RcppEigen/include/Eigen/Dense:1,
from /home/austin/R/x86_64-pc-linux-gnu-library/4.1/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13,
from /home/austin/R/x86_64-pc-linux-gnu-library/4.1/rstan/include/rstan/rstaninc.hpp:3,
from stan_files/bernoulli.hpp:18,
from stan_files/bernoulli.cc:3:
/home/austin/R/x86_64-pc-linux-gnu-library/4.1/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 4, 1>, 0>’:
/home/austin/R/x86_64-pc-linux-gnu-library/4.1/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 4, 1>, 1>’
/home/austin/R/x86_64-pc-linux-gnu-library/4.1/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 4, 1>, 3>’
/home/austin/R/x86_64-pc-linux-gnu-library/4.1/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase<Eigen::Matrix<double, 4, 1> >’
/home/austin/R/x86_64-pc-linux-gnu-library/4.1/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase<Eigen::Matrix<double, 4, 1> >’
/home/austin/R/x86_64-pc-linux-gnu-library/4.1/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase<Eigen::Matrix<double, 4, 1> >’
/home/austin/R/x86_64-pc-linux-gnu-library/4.1/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix<double, 4, 1>’
/home/austin/R/x86_64-pc-linux-gnu-library/4.1/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50: required from ‘class Eigen::QuaternionBase<Eigen::Quaternion >’
/home/austin/R/x86_64-pc-linux-gnu-library/4.1/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:250:7: required from ‘class Eigen::Quaternion’
/home/austin/R/x86_64-pc-linux-gnu-library/4.1/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:92:3: required from here
/home/austin/R/x86_64-pc-linux-gnu-library/4.1/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘_m128d’} [-Wignored-attributes]
55 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
In file included from /home/austin/R/x86_64-pc-linux-gnu-library/4.1/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
from /home/austin/R/x86_64-pc-linux-gnu-library/4.1/BH/include/boost/shared_ptr.hpp:17,
from /home/austin/R/x86_64-pc-linux-gnu-library/4.1/BH/include/boost/date_time/time_clock.hpp:17,
from /home/austin/R/x86_64-pc-linux-gnu-library/4.1/BH/include/boost/date_time/posix_time/posix_time_types.hpp:10,
from /home/austin/R/x86_64-pc-linux-gnu-library/4.1/rstan/include/rstan/stan_fit.hpp:13,
from /home/austin/R/x86_64-pc-linux-gnu-library/4.1/rstan/include/rstan/rstaninc.hpp:4,
from stan_files/bernoulli.hpp:18,
from stan_files/bernoulli.cc:3:
/home/austin/R/x86_64-pc-linux-gnu-library/4.1/BH/include/boost/smart_ptr/detail/shared_count.hpp:361:33: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
361 | explicit shared_count( std::auto_ptr & r ): pi( new sp_counted_impl_p( r.get() ) )
| ^~~~~~~~
In file included from /usr/include/c++/11.1.0/bits/locale_conv.h:41,
from /usr/include/c++/11.1.0/locale:43,
from /usr/include/c++/11.1.0/iomanip:43,
from /home/austin/R/x86_64-pc-linux-gnu-library/4.1/Rcpp/include/RcppCommon.h:53,
from /home/austin/R/x86_64-pc-linux-gnu-library/4.1/Rcpp/include/Rcpp.h:27,
from stan_files/bernoulli.cc:1:
/usr/include/c++/11.1.0/bits/unique_ptr.h:57:28: note: declared here
57 | template class auto_ptr;
| ^~~~~~~~
In file included from /home/austin/R/x86_64-pc-linux-gnu-library/4.1/BH/include/boost/shared_ptr.hpp:17,
from /home/austin/R/x86_64-pc-linux-gnu-library/4.1/BH/include/boost/date_time/time_clock.hpp:17,
from /home/austin/R/x86_64-pc-linux-gnu-library/4.1/BH/include/boost/date_time/posix_time/posix_time_types.hpp:10,
from /home/austin/R/x86_64-pc-linux-gnu-library/4.1/rstan/include/rstan/stan_fit.hpp:13,
from /home/austin/R/x86_64-pc-linux-gnu-library/4.1/rstan/include/rstan/rstaninc.hpp:4,
from stan_files/bernoulli.hpp:18,
from stan_files/bernoulli.cc:3:
/home/austin/R/x86_64-pc-linux-gnu-library/4.1/BH/include/boost/smart_ptr/shared_ptr.hpp:250:65: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
250 | template< class T, class R > struct sp_enable_if_auto_ptr< std::auto_ptr< T >, R >
| ^~~~~~~~
In file included from /usr/include/c++/11.1.0/bits/locale_conv.h:41,
from /usr/include/c++/11.1.0/locale:43,
from /usr/include/c++/11.1.0/iomanip:43,
from /home/austin/R/x86_64-pc-linux-gnu-library/4.1/Rcpp/include/RcppCommon.h:53,
from /home/austin/R/x86_64-pc-linux-gnu-library/4.1/Rcpp/include/Rcpp.h:27,
from stan_files/bernoulli.cc:1:
/usr/include/c++/11.1.0/bits/unique_ptr.h:57:28: note: declared here
57 | template class auto_ptr;
| ^~~~~~~~
In file included from /home/austin/R/x86_64-pc-linux-gnu-library/4.1/BH/include/boost/shared_ptr.hpp:17,
from /home/austin/R/x86_64-pc-linux-gnu-library/4.1/BH/include/boost/date_time/time_clock.hpp:17,
from /home/austin/R/x86_64-pc-linux-gnu-library/4.1/BH/include/boost/date_time/posix_time/posix_time_types.hpp:10,
from /home/austin/R/x86_64-pc-linux-gnu-library/4.1/rstan/include/rstan/stan_fit.hpp:13,
from /home/austin/R/x86_64-pc-linux-gnu-library/4.1/rstan/include/rstan/rstaninc.hpp:4,
from stan_files/bernoulli.hpp:18,
from stan_files/bernoulli.cc:3:
/home/austin/R/x86_64-pc-linux-gnu-library/4.1/BH/include/boost/smart_ptr/shared_ptr.hpp:465:31: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
465 | explicit shared_ptr( std::auto_ptr & r ): px(r.get()), pn()
| ^~~~~~~~
In file included from /usr/include/c++/11.1.0/bits/locale_conv.h:41,
from /usr/include/c++/11.1.0/locale:43,
from /usr/include/c++/11.1.0/iomanip:43,
from /home/austin/R/x86_64-pc-linux-gnu-library/4.1/Rcpp/include/RcppCommon.h:53,
from /home/austin/R/x86_64-pc-linux-gnu-library/4.1/Rcpp/include/Rcpp.h:27,
from stan_files/bernoulli.cc:1:
/usr/include/c++/11.1.0/bits/unique_ptr.h:57:28: note: declared here
57 | template class auto_ptr;
| ^~~~~~~~
In file included from /home/austin/R/x86_64-pc-linux-gnu-library/4.1/BH/include/boost/shared_ptr.hpp:17,
from /home/austin/R/x86_64-pc-linux-gnu-library/4.1/BH/include/boost/date_time/time_clock.hpp:17,
from /home/austin/R/x86_64-pc-linux-gnu-library/4.1/BH/include/boost/date_time/posix_time/posix_time_types.hpp:10,
from /home/austin/R/x86_64-pc-linux-gnu-library/4.1/rstan/include/rstan/stan_fit.hpp:13,
from /home/austin/R/x86_64-pc-linux-gnu-library/4.1/rstan/include/rstan/rstaninc.hpp:4,
from stan_files/bernoulli.hpp:18,
from stan_files/bernoulli.cc:3:
/home/austin/R/x86_64-pc-linux-gnu-library/4.1/BH/include/boost/smart_ptr/shared_ptr.hpp:478:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
478 | shared_ptr( std::auto_ptr && r ): px(r.get()), pn()
| ^~~~~~~~
In file included from /usr/include/c++/11.1.0/bits/locale_conv.h:41,
from /usr/include/c++/11.1.0/locale:43,
from /usr/include/c++/11.1.0/iomanip:43,
from /home/austin/R/x86_64-pc-linux-gnu-library/4.1/Rcpp/include/RcppCommon.h:53,
from /home/austin/R/x86_64-pc-linux-gnu-library/4.1/Rcpp/include/Rcpp.h:27,
from stan_files/bernoulli.cc:1:
/usr/include/c++/11.1.0/bits/unique_ptr.h:57:28: note: declared here
57 | template class auto_ptr;
| ^~~~~~~~
In file included from /home/austin/R/x86_64-pc-linux-gnu-library/4.1/BH/include/boost/shared_ptr.hpp:17,
from /home/austin/R/x86_64-pc-linux-gnu-library/4.1/BH/include/boost/date_time/time_clock.hpp:17,
from /home/austin/R/x86_64-pc-linux-gnu-library/4.1/BH/include/boost/date_time/posix_time/posix_time_types.hpp:10,
from /home/austin/R/x86_64-pc-linux-gnu-library/4.1/rstan/include/rstan/stan_fit.hpp:13,
from /home/austin/R/x86_64-pc-linux-gnu-library/4.1/rstan/include/rstan/rstaninc.hpp:4,
from stan_files/bernoulli.hpp:18,
from stan_files/bernoulli.cc:3:
/home/austin/R/x86_64-pc-linux-gnu-library/4.1/BH/include/boost/smart_ptr/shared_ptr.hpp:561:34: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
561 | shared_ptr & operator=( std::auto_ptr & r )
| ^~~~~~~~
In file included from /usr/include/c++/11.1.0/bits/locale_conv.h:41,
from /usr/include/c++/11.1.0/locale:43,
from /usr/include/c++/11.1.0/iomanip:43,
from /home/austin/R/x86_64-pc-linux-gnu-library/4.1/Rcpp/include/RcppCommon.h:53,
from /home/austin/R/x86_64-pc-linux-gnu-library/4.1/Rcpp/include/Rcpp.h:27,
from stan_files/bernoulli.cc:1:
/usr/include/c++/11.1.0/bits/unique_ptr.h:57:28: note: declared here
57 | template class auto_ptr;
| ^~~~~~~~
In file included from /home/austin/R/x86_64-pc-linux-gnu-library/4.1/BH/include/boost/shared_ptr.hpp:17,
from /home/austin/R/x86_64-pc-linux-gnu-library/4.1/BH/include/boost/date_time/time_clock.hpp:17,
from /home/austin/R/x86_64-pc-linux-gnu-library/4.1/BH/include/boost/date_time/posix_time/posix_time_types.hpp:10,
from /home/austin/R/x86_64-pc-linux-gnu-library/4.1/rstan/include/rstan/stan_fit.hpp:13,
from /home/austin/R/x86_64-pc-linux-gnu-library/4.1/rstan/include/rstan/rstaninc.hpp:4,
from stan_files/bernoulli.hpp:18,
from stan_files/bernoulli.cc:3:
/home/austin/R/x86_64-pc-linux-gnu-library/4.1/BH/include/boost/smart_ptr/shared_ptr.hpp:570:34: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
570 | shared_ptr & operator=( std::auto_ptr && r )
| ^~~~~~~~
In file included from /usr/include/c++/11.1.0/bits/locale_conv.h:41,
from /usr/include/c++/11.1.0/locale:43,
from /usr/include/c++/11.1.0/iomanip:43,
from /home/austin/R/x86_64-pc-linux-gnu-library/4.1/Rcpp/include/RcppCommon.h:53,
from /home/austin/R/x86_64-pc-linux-gnu-library/4.1/Rcpp/include/Rcpp.h:27,
from stan_files/bernoulli.cc:1:
/usr/include/c++/11.1.0/bits/unique_ptr.h:57:28: note: declared here
57 | template class auto_ptr;
| ^~~~~~~~
In file included from /home/austin/R/x86_64-pc-linux-gnu-library/4.1/BH/include/boost/shared_ptr.hpp:17,
from /home/austin/R/x86_64-pc-linux-gnu-library/4.1/BH/include/boost/date_time/time_clock.hpp:17,
from /home/austin/R/x86_64-pc-linux-gnu-library/4.1/BH/include/boost/date_time/posix_time/posix_time_types.hpp:10,
from /home/austin/R/x86_64-pc-linux-gnu-library/4.1/rstan/include/rstan/stan_fit.hpp:13,
from /home/austin/R/x86_64-pc-linux-gnu-library/4.1/rstan/include/rstan/rstaninc.hpp:4,
from stan_files/bernoulli.hpp:18,
from stan_files/bernoulli.cc:3:
/home/austin/R/x86_64-pc-linux-gnu-library/4.1/BH/include/boost/smart_ptr/shared_ptr.hpp: In member function ‘boost::shared_ptr& boost::shared_ptr::operator=(std::auto_ptr<_Up>&&)’:
/home/austin/R/x86_64-pc-linux-gnu-library/4.1/BH/include/boost/smart_ptr/shared_ptr.hpp:572:38: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
572 | this_type( static_cast< std::auto_ptr && >( r ) ).swap( *this );
| ^~~~~~~~
In file included from /usr/include/c++/11.1.0/bits/locale_conv.h:41,
from /usr/include/c++/11.1.0/locale:43,
from /usr/include/c++/11.1.0/iomanip:43,
from /home/austin/R/x86_64-pc-linux-gnu-library/4.1/Rcpp/include/RcppCommon.h:53,
from /home/austin/R/x86_64-pc-linux-gnu-library/4.1/Rcpp/include/Rcpp.h:27,
from stan_files/bernoulli.cc:1:
/usr/include/c++/11.1.0/bits/unique_ptr.h:57:28: note: declared here
57 | template class auto_ptr;
| ^~~~~~~~
In file included from /home/austin/R/x86_64-pc-linux-gnu-library/4.1/RcppEigen/include/Eigen/SparseCore:37,
from /home/austin/R/x86_64-pc-linux-gnu-library/4.1/RcppEigen/include/Eigen/Sparse:26,
from /home/austin/R/x86_64-pc-linux-gnu-library/4.1/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:14,
from /home/austin/R/x86_64-pc-linux-gnu-library/4.1/rstan/include/rstan/rstaninc.hpp:3,
from stan_files/bernoulli.hpp:18,
from stan_files/bernoulli.cc:3:
/home/austin/R/x86_64-pc-linux-gnu-library/4.1/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of ‘class Eigen::SparseMatrixBase<Eigen::SparseMatrix<double, 0, int> >’:
/home/austin/R/x86_64-pc-linux-gnu-library/4.1/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:36:7: required from ‘class Eigen::SparseCompressedBase<Eigen::SparseMatrix<double, 0, int> >’
/home/austin/R/x86_64-pc-linux-gnu-library/4.1/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:96:7: required from ‘class Eigen::SparseMatrix<double, 0, int>’
/home/austin/R/x86_64-pc-linux-gnu-library/4.1/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/ConstrainedConjGrad.h:61:25: required from here
/home/austin/R/x86_64-pc-linux-gnu-library/4.1/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes]
47 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
In file included from /home/austin/R/x86_64-pc-linux-gnu-library/4.1/RcppEigen/include/Eigen/Core:370,
from /home/austin/R/x86_64-pc-linux-gnu-library/4.1/RcppEigen/include/Eigen/Dense:1,
from /home/austin/R/x86_64-pc-linux-gnu-library/4.1/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13,
from /home/austin/R/x86_64-pc-linux-gnu-library/4.1/rstan/include/rstan/rstaninc.hpp:3,
from stan_files/bernoulli.hpp:18,
from stan_files/bernoulli.cc:3:
/home/austin/R/x86_64-pc-linux-gnu-library/4.1/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet<int, -1>’:
/home/austin/R/x86_64-pc-linux-gnu-library/4.1/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits<Eigen::Matrix<int, -1, 1> >’
/home/austin/R/x86_64-pc-linux-gnu-library/4.1/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase<Eigen::Matrix<int, -1, 1> >’
/home/austin/R/x86_64-pc-linux-gnu-library/4.1/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix<int, -1, 1>’
/home/austin/R/x86_64-pc-linux-gnu-library/4.1/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:168:29: required from here
/home/austin/R/x86_64-pc-linux-gnu-library/4.1/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes]
187 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same<PacketType,typename unpacket_traits::half>::value>
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/austin/R/x86_64-pc-linux-gnu-library/4.1/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes]
187 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same<PacketType,typename unpacket_traits::half>::value>
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/austin/R/x86_64-pc-linux-gnu-library/4.1/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes]
/home/austin/R/x86_64-pc-linux-gnu-library/4.1/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) long long int>::half’ {aka ‘__m128i’} [-Wignored-attributes]
/home/austin/R/x86_64-pc-linux-gnu-library/4.1/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:205:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes]
205 | typedef typename find_best_packet_helper<Size,typename packet_traits::type>::type type;
| ^~~~
In file included from /home/austin/R/x86_64-pc-linux-gnu-library/4.1/RcppEigen/include/Eigen/Core:439,
from /home/austin/R/x86_64-pc-linux-gnu-library/4.1/RcppEigen/include/Eigen/Dense:1,
from /home/austin/R/x86_64-pc-linux-gnu-library/4.1/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13,
from /home/austin/R/x86_64-pc-linux-gnu-library/4.1/rstan/include/rstan/rstaninc.hpp:3,
from stan_files/bernoulli.hpp:18,
from stan_files/bernoulli.cc:3:
/home/austin/R/x86_64-pc-linux-gnu-library/4.1/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<int, -1, 1>, 0>’:
/home/austin/R/x86_64-pc-linux-gnu-library/4.1/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<int, -1, 1>, 1>’
/home/austin/R/x86_64-pc-linux-gnu-library/4.1/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<int, -1, 1>, 3>’
/home/austin/R/x86_64-pc-linux-gnu-library/4.1/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase<Eigen::Matrix<int, -1, 1> >’
/home/austin/R/x86_64-pc-linux-gnu-library/4.1/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase<Eigen::Matrix<int, -1, 1> >’
/home/austin/R/x86_64-pc-linux-gnu-library/4.1/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase<Eigen::Matrix<int, -1, 1> >’
/home/austin/R/x86_64-pc-linux-gnu-library/4.1/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix<int, -1, 1>’
/home/austin/R/x86_64-pc-linux-gnu-library/4.1/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:168:29: required from here
/home/austin/R/x86_64-pc-linux-gnu-library/4.1/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes]
55 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
/home/austin/R/x86_64-pc-linux-gnu-library/4.1/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Transpose<Eigen::Matrix<int, -1, 1> >, 0>’:
/home/austin/R/x86_64-pc-linux-gnu-library/4.1/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from ‘class Eigen::DenseCoeffsBase<Eigen::Transpose<Eigen::Matrix<int, -1, 1> >, 1>’
/home/austin/R/x86_64-pc-linux-gnu-library/4.1/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from ‘class Eigen::DenseCoeffsBase<Eigen::Transpose<Eigen::Matrix<int, -1, 1> >, 3>’
/home/austin/R/x86_64-pc-linux-gnu-library/4.1/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase<Eigen::Transpose<Eigen::Matrix<int, -1, 1> > >’
/home/austin/R/x86_64-pc-linux-gnu-library/4.1/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase<Eigen::Transpose<Eigen::Matrix<int, -1, 1> > >’
/home/austin/R/x86_64-pc-linux-gnu-library/4.1/RcppEigen/include/Eigen/src/Core/Transpose.h:115:37: required from ‘class Eigen::TransposeImpl<Eigen::Matrix<int, -1, 1>, Eigen::Dense>’
/home/austin/R/x86_64-pc-linux-gnu-library/4.1/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from ‘class Eigen::Transpose<Eigen::Matrix<int, -1, 1> >’
/home/austin/R/x86_64-pc-linux-gnu-library/4.1/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:178:72: required from here
/home/austin/R/x86_64-pc-linux-gnu-library/4.1/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes]
/home/austin/R/x86_64-pc-linux-gnu-library/4.1/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<int, -1, -1>, 0>’:
/home/austin/R/x86_64-pc-linux-gnu-library/4.1/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<int, -1, -1>, 1>’
/home/austin/R/x86_64-pc-linux-gnu-library/4.1/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<int, -1, -1>, 3>’
/home/austin/R/x86_64-pc-linux-gnu-library/4.1/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase<Eigen::Matrix<int, -1, -1> >’
/home/austin/R/x86_64-pc-linux-gnu-library/4.1/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase<Eigen::Matrix<int, -1, -1> >’
/home/austin/R/x86_64-pc-linux-gnu-library/4.1/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase<Eigen::Matrix<int, -1, -1> >’
/home/austin/R/x86_64-pc-linux-gnu-library/4.1/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix<int, -1, -1>’
/home/austin/R/x86_64-pc-linux-gnu-library/4.1/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:179:36: required from here
/home/austin/R/x86_64-pc-linux-gnu-library/4.1/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes]
In file included from /home/austin/R/x86_64-pc-linux-gnu-library/4.1/RcppEigen/include/Eigen/Core:370,
from /home/austin/R/x86_64-pc-linux-gnu-library/4.1/RcppEigen/include/Eigen/Dense:1,
from /home/austin/R/x86_64-pc-linux-gnu-library/4.1/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13,
from /home/austin/R/x86_64-pc-linux-gnu-library/4.1/rstan/include/rstan/rstaninc.hpp:3,
from stan_files/bernoulli.hpp:18,
from stan_files/bernoulli.cc:3:
/home/austin/R/x86_64-pc-linux-gnu-library/4.1/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet<double, -1>’:
/home/austin/R/x86_64-pc-linux-gnu-library/4.1/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits<Eigen::Matrix<double, -1, -1> >’
/home/austin/R/x86_64-pc-linux-gnu-library/4.1/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase<Eigen::Matrix<double, -1, -1> >’
/home/austin/R/x86_64-pc-linux-gnu-library/4.1/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix<double, -1, -1>’
/home/austin/R/x86_64-pc-linux-gnu-library/4.1/StanHeaders/include/stan/math/rev/mat/fun/typedefs.hpp:11:72: required from here
/home/austin/R/x86_64-pc-linux-gnu-library/4.1/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes]
187 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same<PacketType,typename unpacket_traits::half>::value>
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/austin/R/x86_64-pc-linux-gnu-library/4.1/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes]
187 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same<PacketType,typename unpacket_traits::half>::value>
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/austin/R/x86_64-pc-linux-gnu-library/4.1/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes]
/home/austin/R/x86_64-pc-linux-gnu-library/4.1/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
/home/austin/R/x86_64-pc-linux-gnu-library/4.1/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:205:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes]
205 | typedef typename find_best_packet_helper<Size,typename packet_traits::type>::type type;
| ^~~~
In file included from /home/austin/R/x86_64-pc-linux-gnu-library/4.1/RcppEigen/include/Eigen/Core:439,
from /home/austin/R/x86_64-pc-linux-gnu-library/4.1/RcppEigen/include/Eigen/Dense:1,
from /home/austin/R/x86_64-pc-linux-gnu-library/4.1/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13,
from /home/austin/R/x86_64-pc-linux-gnu-library/4.1/rstan/include/rstan/rstaninc.hpp:3,
from stan_files/bernoulli.hpp:18,
from stan_files/bernoulli.cc:3:
/home/austin/R/x86_64-pc-linux-gnu-library/4.1/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<double, -1, -1>, 0>’:
/home/austin/R/x86_64-pc-linux-gnu-library/4.1/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<double, -1, -1>, 1>’
/home/austin/R/x86_64-pc-linux-gnu-library/4.1/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<double, -1, -1>, 3>’
/home/austin/R/x86_64-pc-linux-gnu-library/4.1/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase<Eigen::Matrix<double, -1, -1> >’
/home/austin/R/x86_64-pc-linux-gnu-library/4.1/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase<Eigen::Matrix<double, -1, -1> >’
/home/austin/R/x86_64-pc-linux-gnu-library/4.1/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase<Eigen::Matrix<double, -1, -1> >’
/home/austin/R/x86_64-pc-linux-gnu-library/4.1/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix<double, -1, -1>’
/home/austin/R/x86_64-pc-linux-gnu-library/4.1/StanHeaders/include/stan/math/rev/mat/fun/typedefs.hpp:11:72: required from here
/home/austin/R/x86_64-pc-linux-gnu-library/4.1/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes]

Start by reproducing install.packages("rstanarm") with R 4.1.2, GCC 11.1.0, gcc-fortran, and Arch Linux. Read tools/make_cc.R and the generated stan_files/bernoulli.cc, then capture the complete compiler output beyond the truncated warnings; done means identifying and resolving the installation failure and confirming the package installs.