Math commit in stanheaders does not exist
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Description
Summary:
When running
git clone --recurse-submodules git@github.com:stan-dev/rstan.git
I'm getting
fatal: remote error: upload-pack: not our ref 520cdec64c004d19d64b01edafe44379977d1a5e
fatal: the remote end hung up unexpectedly
Fetched in submodule path 'StanHeaders/inst/include/mathlib', but it did not contain 520cdec64c004d19d64b01edafe44379977d1a5e. Direct fetching of that commit failed.
Also going to the mathlib link here does not go anywhere
Description:
Full output: cloning from the rstan repo
git clone --recurse-submodules git@github.com:stan-dev/rstan.git
Cloning into 'rstan'...
remote: Enumerating objects: 212, done.
remote: Counting objects: 100% (212/212), done.
remote: Compressing objects: 100% (125/125), done.
remote: Total 40339 (delta 137), reused 133 (delta 86), pack-reused 40127
Receiving objects: 100% (40339/40339), 171.52 MiB | 11.07 MiB/s, done.
Resolving deltas: 100% (19471/19471), done.
Submodule 'StanHeaders/inst/include/mathlib' (https://github.com/stan-dev/math.git) registered for path 'StanHeaders/inst/include/mathlib'
Submodule 'stan' (https://github.com/stan-dev/stan.git) registered for path 'StanHeaders/inst/include/upstream'
Cloning into '/home/steve/stan/origin/rstan/StanHeaders/inst/include/mathlib'...
remote: Enumerating objects: 34, done.
remote: Counting objects: 100% (34/34), done.
remote: Compressing objects: 100% (21/21), done.
remote: Total 499024 (delta 16), reused 27 (delta 13), pack-reused 498990
Receiving objects: 100% (499024/499024), 454.77 MiB | 5.05 MiB/s, done.
Resolving deltas: 100% (357710/357710), done.
Cloning into '/home/steve/stan/origin/rstan/StanHeaders/inst/include/upstream'...
remote: Enumerating objects: 49, done.
remote: Counting objects: 100% (49/49), done.
remote: Compressing objects: 100% (40/40), done.
remote: Total 233553 (delta 17), reused 25 (delta 8), pack-reused 233504
Receiving objects: 100% (233553/233553), 296.19 MiB | 5.70 MiB/s, done.
Resolving deltas: 100% (164657/164657), done.
fatal: remote error: upload-pack: not our ref 520cdec64c004d19d64b01edafe44379977d1a5e
fatal: the remote end hung up unexpectedly
Fetched in submodule path 'StanHeaders/inst/include/mathlib', but it did not contain 520cdec64c004d19d64b01edafe44379977d1a5e. Direct fetching of that commit failed.
Current Output:
going into the repo and running git status yields
On branch develop
Your branch is up to date with 'origin/develop'.
Changes not staged for commit:
(use "git add <file>..." to update what will be committed)
(use "git restore <file>..." to discard changes in working directory)
(commit or discard the untracked or modified content in submodules)
modified: StanHeaders/inst/include/mathlib (new commits, modified content)
modified: StanHeaders/inst/include/upstream (new commits)
no changes added to commit (use "git add" and/or "git commit -a")
Expected Output:
I would expect it to have the pinned versions and not new things
RStan Version:
74f847ca1f61944b5dccc173f3eae435a7b6f1cb
R Version:
The version of R you are running (e.g., from R.version.string)
Operating System:
Ubuntu 20.02
$ git --version
git version 2.25.1
Contributor guide
No contributing guide indexed for this repository
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start with the RStan commit 74f847ca1f61944b5dccc173f3eae435a7b6f1cb and inspect the submodule references for StanHeaders/inst/include/mathlib and StanHeaders/inst/include/upstream. Reproduce the recursive clone and verify that the referenced mathlib commit is available; done means the clone succeeds with the pinned submodule versions and no modified submodule state.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- git, r
- Domain
- build-system, tooling
- Issue type
- Bug
- Difficulty
- 4/5
- Estimated time
- 3-5 days
- Activity status
- Stale
- Clarity
- Mostly clear
- Newbie friendliness
- 35/100