Error on stan when running 8school example
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Description
i just installed rstan in R, but it can not work.
i just followed the procedure 'Example 1: Eight Schools' in getting start.
The error is as follow.
library("rstan")
Loading required package: StanHeaders
Loading required package: ggplot2
rstan (Version 2.19.3, GitRev: 2e1f913d3ca3)
For execution on a local, multicore CPU with excess RAM we recommend calling
options(mc.cores = parallel::detectCores()).
To avoid recompilation of unchanged Stan programs, we recommend calling
rstan_options(auto_write = TRUE)
For improved execution time, we recommend calling
Sys.setenv(LOCAL_CPPFLAGS = '-march=corei7 -mtune=corei7')
although this causes Stan to throw an error on a few processors.
options(mc.cores = parallel::detectCores())
rstan_options(auto_write = TRUE)
Sys.setenv(LOCAL_CPPFLAGS = '-march=corei7')
schools_dat <- list(J = 8,
-
y = c(28, 8, -3, 7, -1, 1, 18, 12), -
sigma = c(15, 10, 16, 11, 9, 11, 10, 18))
fit <- stan(file = '8schools.stan', data = schools_dat)
Error in compileCode(f, code, language = language, verbose = verbose) :
Compilation ERROR, function(s)/method(s) not created! sh: C:/Program: No such file or directory
make: *** [C:/PROGRA1/R/R-351.3/etc/x64/Makeconf:215: file2201ad3164e.o] Error 127
In addition: Warning message:
In system(cmd, intern = !verbose) :
running command 'C:/PROGRA1/R/R-351.3/bin/x64/R CMD SHLIB file2201ad3164e.cpp 2> file2201ad3164e.cpp.err.txt' had status 1
Error in sink(type = "output") : invalid connection
R version 3.5.3
Rtools version 3.5.0.4
Rstan version 2.19.3
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Research direction
Start by reproducing the Eight Schools example with 8schools.stan using the reported R 3.5.3, Rtools 3.5.0.4, and rstan 2.19.3 versions. Inspect the failing R CMD SHLIB compilation command and its C++ output; done means the example compiles and the stan(file = '8schools.stan', data = schools_dat) call runs successfully.
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Assessment
- Tech stack
- r
- Domain
- build-system
- Issue type
- Bug
- Difficulty
- 4/5
- Estimated time
- 3-5 days
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 25/100