Can't load data from calling environment
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Description
Summary:
Please provide a short summary (no more than a sentence or two).
rstan can not load data directly from the calling environment.
Description:
Describe the issue as clearly as possible.
Using the option in stan() to load the data directly from the environment rather than passing a list in does not work. I received Exception: variable does not exist error. I was able to pass in the data directly as a list and that worked.
Reproducible Steps:
Please report steps to reproduce the issue. If it's not possible to reproduce, please include a description of how you discovered the issue.
If you have a reproducible example, please include it.
fit <- stan(model_code = code)
Current Output:
If applicable, any relevant output from RStan.
Error in new_CppObject_xp(fields$.module, fields$.pointer, ...) :
Exception: variable does not exist; processing stage=data initialization; variable name=J; base type=int (in 'modelf019580b27bf_10cdc817017e119334b16bfc660115b2' at line 3)
Expected Output:
If applicable, the output you expected from RStan.
RStan Version:
The version of RStan you are running (e.g., from packageVersion("rstan"))
> packageVersion("rstan")
[1] ‘2.19.2’
R Version:
The version of R you are running (e.g., from R.version.string)
> R.version.string
[1] "R version 3.6.1 (2019-07-05)"
Operating System:
Your operating system (e.g., OS X 10.11.3)
OSX 10.14.6
At my company we can replicate all of this on windows 10 with the latest release versions of R, RStudio, Rtools, rstan, etc...
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First steps
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Research direction
Start by reproducing the reported stan(model_code = code) call and compare loading data from the calling environment with passing the same data as a list. Use the reported variable does not exist error for J as the failure condition; done means environment-supplied data loads successfully without the data-initialization exception.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- r
- Domain
- api
- Issue type
- Bug
- Difficulty
- 3/5
- Estimated time
- 1-2 days
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 35/100