stan-dev / stan-dev/rstan

Stanheaders fails to install from source - looking for old cvodes folder

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R
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Description

Summary:

The install_StanHeaders.R script fails because the cleanup script is attempting to find the folder inst/include/mathlib/lib/cvodes_2.9.0 when the folder is now inst/include/mathlib/lib/cvodes_3.1.0

Current Output:
Installing StanHeaders
'/usr/lib/R/bin/R' --no-site-file --no-environ --no-save --no-restore --quiet CMD  \
  INSTALL '/tmp/RtmpEJQQf0/git2r-273912a3c235/StanHeaders'  \
  --library='/home/andrew/R/x86_64-pc-linux-gnu-library/3.4' --install-tests  \
  --preclean 

* installing *source* package ‘StanHeaders’ ...
cp: cannot stat 'inst/include/mathlib/lib/cvodes_2.9.0': No such file or directory
mv: cannot stat 'inst/include/mathlib/lib/cvodes_2.9.0/include/*': No such file or directory
** libs
make: *** No rule to make target 'cvodes/src/cvodes/cvodes.o', needed by 'static'.  Stop.
ERROR: compilation failed for package ‘StanHeaders’
* removing ‘/home/andrew/R/x86_64-pc-linux-gnu-library/3.4/StanHeaders’
Error: Command failed (1)
RStan Version:

Latest version from git

R Version:

3.4.3

Operating System:

Ubuntu 17.10

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First steps

  1. Read the whole issue, then the project's contributing guide.
  2. Comment on the issue to say you are picking it up — it saves two people doing the same work.
  3. Fork the repository and make your change on a branch.
  4. Open a pull request that references the issue number.

Research direction

Start with install_StanHeaders.R and the cleanup step that references cvodes_2.9.0. Check how the package now provides cvodes_3.1.0, update the stale reference, and run the source installation to confirm the cleanup and compilation complete successfully.

Written by the indexing model from the issue text.

Assessment

Tech stack
r
Domain
build-system
Issue type
Bug
Difficulty
2/5
Estimated time
1-3 hours
Activity status
Stale
Clarity
Clearly specified
Newbie friendliness
45/100

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