Rstan stopped working with multiple cores
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Description
Summary:
I was using Rstan with multiple cores on my laptop and it worked just fine. It suddenly stopped working and now continues to be broken. I've restarted the computer, R, re-installed Rstan and its dependencies, but the error persists.
Description:
The code works fine if I set
options(mc.cores = 1)
but breaks for multiple cores, e.g.,
options(mc.cores = 2)
options(mc.cores = parallel::detectCores())
Reproducible Steps:
Please report steps to reproduce the issue. If it's not possible to reproduce, please include a description of how you discovered the issue.
If you have a reproducible example, please include it.
Current Output:
fit_gen_lognormal_shift_constrained <-
- stan(file = 'LogNormalShiftConstrained_ReadingTimes_stationary_gen.stan',
-
data = ReadingTimes_data, -
chains = 4, -
iter = 2000)
starting worker pid=841 on localhost:11528 at 14:13:31.618
Error in socketConnection(master, port = port, blocking = TRUE, open = "a+b", :
cannot open the connection
Calls: ... doTryCatch -> recvData -> makeSOCKmaster -> socketConnection
In addition: Warning message:
In socketConnection(master, port = port, blocking = TRUE, open = "a+b", :
localhost:11528 cannot be opened
Execution halted
Expected Output:
If applicable, the output you expected from RStan.
RStan Version:
rstan (Version 2.17.3, GitRev: 2e1f913d3ca3)
R Version:
platform x86_64-apple-darwin15.6.0
arch x86_64
os darwin15.6.0
system x86_64, darwin15.6.0
status
major 3
minor 4.3
year 2017
month 11
day 30
svn rev 73796
language R
version.string R version 3.4.3 (2017-11-30)
nickname Kite-Eating Tree
Operating System:
Mac OS 10.13.3 (17D47)
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Research direction
Start with the reported stan(...) call using options(mc.cores = 1), 2, and parallel::detectCores(), then compare the socketConnection error and worker startup output. Check the reported RStan 2.17.3, R 3.4.3, and macOS 10.13.3 environment; the issue is done when multi-core execution works while the single-core case remains working.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- macos, r
- Domain
- tooling
- Issue type
- Bug
- Difficulty
- 4/5
- Estimated time
- 3-5 days
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 25/100