sokrypton / sokrypton/ColabFold
Download only the required weights in batch notebook
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- Dominant language
- Jupyter Notebook
- Stars
- 2.9k
- Forks
- 747
- PR merge metrics
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Description
Currently, the batch notebook downloads both weight types, independent of which ones are actually required. Additionally, it would be nice for AlphaFold2.ipynb to download the weights in the setup step instead of the prediction step
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start by reading the batch notebook and AlphaFold2.ipynb, comparing their setup and prediction steps for weight downloads. Confirm which weight types each batch mode requires; done means only required weights are downloaded and AlphaFold2.ipynb downloads them during setup rather than prediction.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- jupyter-notebook
- Domain
- bioinformatics
- Issue type
- Feature
- Difficulty
- 3/5
- Estimated time
- 1-2 days
- Activity status
- Stale
- Clarity
- Mostly clear
- Newbie friendliness
- 45/100