sokrypton / sokrypton/ColabFold
"Timeout while submitting to MSA server" This has been going on for a day. How do I fix it?
Nobody has claimed this yet.
- Dominant language
- Jupyter Notebook
- Stars
- 2.9k
- Forks
- 747
- PR merge metrics
- No merged PRs in 30d
Description
2026-07-09 11:46:10,713 Timeout while submitting to MSA server. Retrying...
2026-07-09 11:46:16,746 Timeout while submitting to MSA server. Retrying...
2026-07-09 11:46:22,778 Timeout while submitting to MSA server. Retrying...
2026-07-09 11:46:28,810 Timeout while submitting to MSA server. Retrying...
2026-07-09 11:46:34,842 Timeout while submitting to MSA server. Retrying...
2026-07-09 11:46:40,874 Timeout while submitting to MSA server. Retrying...
2026-07-09 11:46:46,906 Timeout while submitting to MSA server. Retrying...
2026-07-09 11:46:53,062 Timeout while submitting to MSA server. Retrying...
2026-07-09 11:46:59,094 Timeout while submitting to MSA server. Retrying...
SUBMIT: 0%| | 0/150 [elapsed: 2:38:41 remaining: ?]
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
The report names no file, entry point, or test; it only shows repeated timeouts while submitting 150 items to the MSA server. Start by tracing the submission path and reproducing the reported timeout, then establish whether the issue is in the client or the server before defining a fix and verification step.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- jupyter-notebook
- Domain
- bioinformatics
- Issue type
- Bug
- Difficulty
- 4/5
- Estimated time
- 3-5 days
- Activity status
- Quiet
- Clarity
- Needs clarification
- Newbie friendliness
- 25/100