sokrypton / sokrypton/ColabFold
IndentationError in colabfold.plot (plot_msa_v2)
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Description
Hi ColabFold team,
I encountered an IndentationError when running ColabFold locally. The traceback is as follows:
Traceback (most recent call last):
File ".../IPython/core/interactiveshell.py", line 3579, in run_code
exec(code_obj, self.user_global_ns, self.user_ns)
File ".../colab_fold_runner.py", line 187, in colab_fold_runner
results = run(
File ".../colabfold/batch.py", line 1490, in run
from colabfold.plot import plot_msa_v2
File ".../colabfold/plot.py", line 10
plt.figure(figsize=(3 * num_models, 2), dpi=100)
^
IndentationError: unexpected indent
It seems that there is an unexpected indentation in colabfold/plot.py at the line where plt.figure() is called.
Thanks for looking into this!
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Research direction
Start with colabfold/plot.py at line 10, reached through the import in colabfold/batch.py line 1490. Run the reported local import or a minimal reproduction to confirm the syntax error. Done means plot_msa_v2 imports without an IndentationError and the existing plotting path can proceed.
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Assessment
- Tech stack
- matplotlib, python
- Domain
- bioinformatics, data-visualization
- Issue type
- Bug
- Difficulty
- 1/5
- Estimated time
- Under an hour
- Activity status
- Quiet
- Clarity
- Clearly specified
- Newbie friendliness
- 68/100