sokrypton / sokrypton/ColabFold
MsaServer: file names and hierarchy details of "databases"
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Description
Hi,
I'm trying to set up the local MSA server, but I'm struggling at the step of the databases.
I've ran the setup_databases.sh script several times, but each time it is complaining either about the files that are not in the correct place, or about files that are missing.
Would someone be able to provide me with the details of what is actually expected in terms of files and folders in the database directory?
Thank you kindly in advance,
Erwin
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start by reading setup_databases.sh and tracing the database directory paths and file checks mentioned by the setup process. Document the expected files and folder hierarchy, with enough detail for a local MSA server setup to complete without missing-file or misplaced-file errors.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- shell
- Domain
- databases, documentation
- Issue type
- Documentation
- Difficulty
- 3/5
- Estimated time
- 1-2 days
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 35/100