sokrypton / sokrypton/ColabFold
IndexError
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Description
Hi
I am having problem with ColabFold: AlphaFold2 w/ MMseqs2 BATCH
I ran similar jobs before a few weeks back but never had an issue. Now I am running the same job but the program seems to have problems reading fasta files in the folder. Any thoughts?
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start by reproducing the reported ColabFold AlphaFold2 with MMseqs2 BATCH job using the FASTA files in the folder and inspect the IndexError shown in the attached image. Determine whether the same input still fails and identify the specific FASTA-reading step involved; the issue is resolved when the cause and a verified fix or workaround are documented.
Written by the indexing model from the issue text.
Assessment
- Domain
- bioinformatics
- Issue type
- Bug
- Difficulty
- 4/5
- Estimated time
- 3-5 days
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 25/100