sokrypton / sokrypton/ColabFold
--prefilter-mode argument not available in v1.5.5
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Description
Hi, v1.5.5 does not have the --prefilter-mode flag for colabfold_search. Looks like it was introduced in commit be06b209527422fe88a59d53901e6cf0e02e0a33. Can a new version be released to PyPI?
Here is the output from my terminal:
usage: colabfold_search [-h] [-s S] [--db1 DB1] [--db2 DB2] [--db3 DB3] [--use-env {0,1}]
[--use-templates {0,1}] [--filter {0,1}] [--mmseqs MMSEQS]
[--expand-eval EXPAND_EVAL] [--align-eval ALIGN_EVAL] [--diff DIFF]
[--qsc QSC] [--max-accept MAX_ACCEPT] [--pairing_strategy PAIRING_STRATEGY]
[--db-load-mode DB_LOAD_MODE] [--threads THREADS]
query dbbase base
colabfold_search: error: unrecognized arguments: --prefilter-mode 1
Appreciate the awesome project! Thank you!
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Research direction
Start by comparing v1.5.5 with commit be06b209527422fe88a59d53901e6cf0e02e0a33, focusing on the colabfold_search command and its --prefilter-mode argument. Confirm the argument is present in the intended code and determine the repository's release path for publishing a new version to PyPI.
Written by the indexing model from the issue text.
Assessment
- Domain
- bioinformatics, cli, release
- Issue type
- Bug
- Difficulty
- 3/5
- Estimated time
- 1-2 days
- Activity status
- Stale
- Clarity
- Clearly specified
- Newbie friendliness
- 35/100