sokrypton / sokrypton/ColabFold
Colabfold mmseqs-server initialization failure.
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Description
I've installed the databases in the MsaServer folder and run the startup and install script. It works fine, but the mmseqs-api does not detect the databases. The endpoint /databases or /databases/all return empty lists.
When we start the server, in the Databases.go script there is a line 229 that looks for "*.params" file. Where do we generate these from? I suspect since there is no params file in the database folder, it doesn't detect any.
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start with Databases.go around line 229 and inspect how /databases and /databases/all discover *.params files. Trace the startup and install script alongside the MsaServer database layout to determine how the required files are produced; done means the endpoints return the installed databases.
Written by the indexing model from the issue text.
Assessment
- Domain
- api, databases
- Issue type
- Bug
- Difficulty
- 4/5
- Estimated time
- 3-5 days
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 30/100