sokrypton / sokrypton/ColabFold
Returning representations from structure module
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- Jupyter Notebook
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Description
Currently, if "save_all" is selected, only single representation of 256 dimensions is returned. However, in the official alphafold repository, if return_representation is set to true, single representation of 384 dimensions will be returned. Is there anyway, save_all option could return it as well ?
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start with the structure module and trace how the save_all option selects representations. Compare that behavior with the official AlphaFold return_representation behavior described in the issue. Done means save_all also returns the requested 384-dimensional representation, while preserving the existing output behavior.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- jupyter-notebook
- Domain
- bioinformatics
- Issue type
- Feature
- Difficulty
- 3/5
- Estimated time
- 1-2 days
- Activity status
- Stale
- Clarity
- Mostly clear
- Newbie friendliness
- 45/100