sokrypton / sokrypton/ColabFold
colabfold_batch: error: unrecognized arguments: --af3-json
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Description
python 3.11.11
colabfold version:
alphafold-colabfold 2.3.8
colabfold 1.5.5
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Reproduce the colabfold_batch invocation containing --af3-json with Python 3.11.11 and the listed ColabFold versions, then trace the argument handling that rejects it. Done means the reported invocation either accepts the option or clearly reports the supported usage, with a regression check for the behavior.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- python
- Domain
- bioinformatics
- Issue type
- Bug
- Difficulty
- 3/5
- Estimated time
- 1-2 days
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 25/100